Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt argR and yhcN are separated by 364 nucleotides yhcN and yhcO are separated by 55 nucleotides yhcO and aaeB are separated by 91 nucleotides
BNILDI_01945: argR - transcriptional regulator ArgR, at 382,050 to 382,520
argR
BNILDI_01950: yhcN - peroxide/acid stress response protein YhcN, at 382,885 to 383,148
yhcN
BNILDI_01955: yhcO - Uncharacterized protein YhcO, at 383,204 to 383,476
yhcO
BNILDI_01960: aaeB - p-hydroxybenzoic acid efflux pump subunit AaeB, at 383,568 to 385,535
aaeB
Position (kb) 383
384 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 382.217 kb on - strand, within argR at 382.221 kb on - strand, within argR at 382.281 kb on - strand, within argR at 382.281 kb on - strand, within argR at 382.370 kb on - strand, within argR at 382.410 kb on - strand, within argR at 382.518 kb on + strand at 382.860 kb on - strand at 382.868 kb on - strand at 382.904 kb on + strand at 382.904 kb on + strand at 382.913 kb on + strand, within yhcN at 383.038 kb on - strand, within yhcN at 383.107 kb on - strand, within yhcN at 383.267 kb on + strand, within yhcO at 383.267 kb on + strand, within yhcO at 383.267 kb on + strand, within yhcO at 383.268 kb on - strand, within yhcO at 383.386 kb on + strand, within yhcO at 383.393 kb on - strand, within yhcO at 383.466 kb on + strand at 383.470 kb on + strand at 383.523 kb on - strand at 383.526 kb on + strand at 383.526 kb on + strand at 383.527 kb on - strand at 383.569 kb on + strand at 383.569 kb on + strand at 383.569 kb on + strand at 383.593 kb on + strand at 383.597 kb on + strand at 383.597 kb on + strand at 383.598 kb on - strand at 383.598 kb on - strand at 383.598 kb on - strand at 383.661 kb on + strand at 383.720 kb on + strand at 383.740 kb on - strand at 383.740 kb on - strand at 383.882 kb on + strand, within aaeB at 383.883 kb on - strand, within aaeB at 383.988 kb on - strand, within aaeB at 383.994 kb on + strand, within aaeB at 384.020 kb on + strand, within aaeB at 384.020 kb on + strand, within aaeB at 384.038 kb on + strand, within aaeB at 384.135 kb on - strand, within aaeB at 384.135 kb on - strand, within aaeB at 384.135 kb on - strand, within aaeB at 384.135 kb on - strand, within aaeB at 384.138 kb on + strand, within aaeB at 384.139 kb on - strand, within aaeB at 384.139 kb on - strand, within aaeB at 384.189 kb on + strand, within aaeB at 384.189 kb on + strand, within aaeB at 384.221 kb on + strand, within aaeB at 384.224 kb on + strand, within aaeB at 384.224 kb on + strand, within aaeB at 384.225 kb on - strand, within aaeB at 384.261 kb on - strand, within aaeB at 384.468 kb on - strand, within aaeB
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 382,217 - argR BNILDI_01945 0.35 +0.1 382,221 - argR BNILDI_01945 0.36 +2.3 382,281 - argR BNILDI_01945 0.49 +1.4 382,281 - argR BNILDI_01945 0.49 -1.2 382,370 - argR BNILDI_01945 0.68 -2.7 382,410 - argR BNILDI_01945 0.76 -0.2 382,518 + +0.4 382,860 - -0.6 382,868 - +0.4 382,904 + -0.5 382,904 + -2.7 382,913 + yhcN BNILDI_01950 0.11 +1.5 383,038 - yhcN BNILDI_01950 0.58 -0.7 383,107 - yhcN BNILDI_01950 0.84 -1.0 383,267 + yhcO BNILDI_01955 0.23 +0.4 383,267 + yhcO BNILDI_01955 0.23 -1.2 383,267 + yhcO BNILDI_01955 0.23 -0.9 383,268 - yhcO BNILDI_01955 0.23 +0.2 383,386 + yhcO BNILDI_01955 0.67 +1.9 383,393 - yhcO BNILDI_01955 0.69 -0.5 383,466 + +0.2 383,470 + +0.1 383,523 - +0.3 383,526 + -3.2 383,526 + -0.3 383,527 - -2.7 383,569 + -0.8 383,569 + -0.9 383,569 + -0.1 383,593 + +0.7 383,597 + -1.3 383,597 + -3.9 383,598 - -1.3 383,598 - +0.0 383,598 - -0.0 383,661 + -0.6 383,720 + +0.1 383,740 - -2.8 383,740 - +0.4 383,882 + aaeB BNILDI_01960 0.16 +2.8 383,883 - aaeB BNILDI_01960 0.16 -1.4 383,988 - aaeB BNILDI_01960 0.21 +0.5 383,994 + aaeB BNILDI_01960 0.22 -0.3 384,020 + aaeB BNILDI_01960 0.23 -0.6 384,020 + aaeB BNILDI_01960 0.23 +0.5 384,038 + aaeB BNILDI_01960 0.24 +0.8 384,135 - aaeB BNILDI_01960 0.29 +1.0 384,135 - aaeB BNILDI_01960 0.29 -0.6 384,135 - aaeB BNILDI_01960 0.29 +0.7 384,135 - aaeB BNILDI_01960 0.29 +0.3 384,138 + aaeB BNILDI_01960 0.29 -3.3 384,139 - aaeB BNILDI_01960 0.29 +0.1 384,139 - aaeB BNILDI_01960 0.29 +0.1 384,189 + aaeB BNILDI_01960 0.32 +0.4 384,189 + aaeB BNILDI_01960 0.32 +0.1 384,221 + aaeB BNILDI_01960 0.33 -3.2 384,224 + aaeB BNILDI_01960 0.33 +0.5 384,224 + aaeB BNILDI_01960 0.33 +0.5 384,225 - aaeB BNILDI_01960 0.33 -1.7 384,261 - aaeB BNILDI_01960 0.35 +0.2 384,468 - aaeB BNILDI_01960 0.46 +0.8
Or see this region's nucleotide sequence