Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yraH and yraI are separated by 79 nucleotides yraI and yraJ are separated by 29 nucleotides yraJ and fimA are separated by 10 nucleotides
BNILDI_01475: yraH - Uncharacterized fimbrial-like protein YraH, at 290,543 to 291,127
yraH
BNILDI_01480: yraI - putative fimbrial chaperone YraI, at 291,207 to 291,902
yraI
BNILDI_01485: yraJ - Outer membrane usher protein YraJ, at 291,932 to 294,448
yraJ
BNILDI_01490: fimA - fimbrial protein, at 294,459 to 295,550
fimA
Position (kb) 291
292
293
294
295 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 290.972 kb on - strand, within yraH at 290.994 kb on - strand, within yraH at 291.019 kb on + strand, within yraH at 291.044 kb on + strand, within yraH at 291.047 kb on + strand, within yraH at 291.047 kb on + strand, within yraH at 291.047 kb on + strand, within yraH at 291.048 kb on - strand, within yraH at 291.051 kb on + strand, within yraH at 291.052 kb on - strand, within yraH at 291.125 kb on + strand at 291.128 kb on + strand at 291.129 kb on - strand at 291.202 kb on + strand at 291.309 kb on + strand, within yraI at 291.310 kb on - strand, within yraI at 291.393 kb on - strand, within yraI at 291.397 kb on + strand, within yraI at 291.398 kb on - strand, within yraI at 291.701 kb on + strand, within yraI at 291.702 kb on - strand, within yraI at 291.801 kb on - strand, within yraI at 291.808 kb on + strand, within yraI at 291.809 kb on - strand, within yraI at 291.809 kb on - strand, within yraI at 291.811 kb on + strand, within yraI at 291.907 kb on + strand at 291.907 kb on + strand at 292.059 kb on - strand at 292.062 kb on - strand at 292.088 kb on - strand at 292.157 kb on + strand at 292.263 kb on + strand, within yraJ at 292.276 kb on + strand, within yraJ at 292.394 kb on - strand, within yraJ at 292.422 kb on - strand, within yraJ at 292.440 kb on - strand, within yraJ at 292.470 kb on + strand, within yraJ at 292.470 kb on + strand, within yraJ at 292.483 kb on + strand, within yraJ at 292.491 kb on - strand, within yraJ at 292.499 kb on - strand, within yraJ at 292.499 kb on - strand, within yraJ at 292.547 kb on + strand, within yraJ at 292.556 kb on - strand, within yraJ at 292.594 kb on + strand, within yraJ at 292.594 kb on + strand, within yraJ at 292.595 kb on - strand, within yraJ at 292.595 kb on - strand, within yraJ at 292.598 kb on + strand, within yraJ at 292.598 kb on + strand, within yraJ at 292.598 kb on + strand, within yraJ at 292.598 kb on + strand, within yraJ at 292.667 kb on - strand, within yraJ at 292.733 kb on + strand, within yraJ at 292.734 kb on - strand, within yraJ at 292.734 kb on - strand, within yraJ at 292.741 kb on + strand, within yraJ at 292.771 kb on + strand, within yraJ at 292.771 kb on + strand, within yraJ at 292.771 kb on + strand, within yraJ at 292.772 kb on - strand, within yraJ at 292.772 kb on - strand, within yraJ at 292.772 kb on - strand, within yraJ at 292.772 kb on - strand, within yraJ at 292.772 kb on - strand, within yraJ at 292.860 kb on - strand, within yraJ at 292.860 kb on - strand, within yraJ at 292.868 kb on + strand, within yraJ at 292.938 kb on + strand, within yraJ at 293.029 kb on - strand, within yraJ at 293.034 kb on - strand, within yraJ at 293.112 kb on + strand, within yraJ at 293.112 kb on + strand, within yraJ at 293.112 kb on + strand, within yraJ at 293.113 kb on - strand, within yraJ at 293.113 kb on - strand, within yraJ at 293.114 kb on + strand, within yraJ at 293.114 kb on + strand, within yraJ at 293.114 kb on + strand, within yraJ at 293.115 kb on - strand, within yraJ at 293.128 kb on + strand, within yraJ at 293.141 kb on + strand, within yraJ at 293.142 kb on - strand, within yraJ at 293.142 kb on - strand, within yraJ at 293.142 kb on - strand, within yraJ at 293.168 kb on + strand, within yraJ at 293.297 kb on + strand, within yraJ at 293.297 kb on + strand, within yraJ at 293.343 kb on - strand, within yraJ at 293.346 kb on - strand, within yraJ at 293.346 kb on - strand, within yraJ at 293.352 kb on - strand, within yraJ at 293.366 kb on + strand, within yraJ at 293.367 kb on - strand, within yraJ at 293.407 kb on + strand, within yraJ at 293.407 kb on + strand, within yraJ at 293.407 kb on + strand, within yraJ at 293.454 kb on + strand, within yraJ at 293.474 kb on + strand, within yraJ at 293.475 kb on - strand, within yraJ at 293.475 kb on - strand, within yraJ at 293.498 kb on + strand, within yraJ at 293.527 kb on + strand, within yraJ at 293.528 kb on - strand, within yraJ at 293.580 kb on - strand, within yraJ at 293.580 kb on - strand, within yraJ at 293.580 kb on - strand, within yraJ at 293.585 kb on + strand, within yraJ at 293.586 kb on - strand, within yraJ at 293.608 kb on + strand, within yraJ at 293.646 kb on + strand, within yraJ at 293.647 kb on - strand, within yraJ at 293.763 kb on - strand, within yraJ at 293.764 kb on + strand, within yraJ at 293.764 kb on + strand, within yraJ at 293.800 kb on + strand, within yraJ at 293.800 kb on + strand, within yraJ at 293.800 kb on + strand, within yraJ at 293.801 kb on - strand, within yraJ at 293.806 kb on + strand, within yraJ at 293.888 kb on + strand, within yraJ at 293.942 kb on + strand, within yraJ at 294.020 kb on - strand, within yraJ at 294.051 kb on - strand, within yraJ at 294.063 kb on - strand, within yraJ at 294.063 kb on - strand, within yraJ at 294.084 kb on + strand, within yraJ at 294.088 kb on + strand, within yraJ at 294.088 kb on + strand, within yraJ at 294.088 kb on + strand, within yraJ at 294.091 kb on + strand, within yraJ at 294.198 kb on + strand at 294.205 kb on + strand at 294.205 kb on + strand at 294.206 kb on - strand at 294.300 kb on + strand at 294.303 kb on + strand at 294.303 kb on + strand at 294.303 kb on + strand at 294.303 kb on + strand at 294.304 kb on - strand at 294.304 kb on - strand at 294.305 kb on + strand at 294.306 kb on - strand at 294.306 kb on - strand at 294.326 kb on - strand at 294.345 kb on + strand at 294.346 kb on - strand at 294.346 kb on - strand at 294.388 kb on + strand at 294.388 kb on + strand at 294.391 kb on + strand at 294.420 kb on + strand at 294.421 kb on - strand at 294.423 kb on + strand at 294.423 kb on + strand at 294.423 kb on + strand at 294.424 kb on - strand at 294.424 kb on - strand at 294.476 kb on + strand at 294.476 kb on + strand at 294.476 kb on + strand at 294.477 kb on - strand at 294.478 kb on + strand at 294.514 kb on - strand at 294.565 kb on - strand at 294.626 kb on + strand, within fimA at 294.640 kb on + strand, within fimA at 294.641 kb on - strand, within fimA at 294.644 kb on + strand, within fimA at 294.645 kb on - strand, within fimA at 294.645 kb on - strand, within fimA at 294.703 kb on - strand, within fimA at 294.703 kb on - strand, within fimA at 294.703 kb on - strand, within fimA at 294.703 kb on - strand, within fimA at 294.703 kb on - strand, within fimA at 294.705 kb on - strand, within fimA at 294.718 kb on + strand, within fimA at 294.723 kb on - strand, within fimA at 294.723 kb on - strand, within fimA at 294.723 kb on - strand, within fimA at 294.751 kb on - strand, within fimA at 294.776 kb on + strand, within fimA at 294.777 kb on - strand, within fimA at 294.787 kb on + strand, within fimA at 294.787 kb on + strand, within fimA at 294.856 kb on + strand, within fimA at 294.857 kb on - strand, within fimA at 294.857 kb on - strand, within fimA at 294.872 kb on - strand, within fimA at 294.947 kb on + strand, within fimA at 294.948 kb on - strand, within fimA at 294.964 kb on - strand, within fimA at 295.023 kb on - strand, within fimA at 295.079 kb on - strand, within fimA at 295.145 kb on + strand, within fimA at 295.145 kb on + strand, within fimA at 295.146 kb on - strand, within fimA at 295.149 kb on - strand, within fimA at 295.149 kb on - strand, within fimA at 295.154 kb on + strand, within fimA at 295.214 kb on + strand, within fimA at 295.239 kb on + strand, within fimA at 295.239 kb on + strand, within fimA at 295.240 kb on - strand, within fimA at 295.240 kb on - strand, within fimA at 295.240 kb on - strand, within fimA at 295.310 kb on - strand, within fimA at 295.310 kb on - strand, within fimA at 295.403 kb on + strand, within fimA at 295.403 kb on + strand, within fimA
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 290,972 - yraH BNILDI_01475 0.73 +0.3 290,994 - yraH BNILDI_01475 0.77 +1.5 291,019 + yraH BNILDI_01475 0.81 -2.2 291,044 + yraH BNILDI_01475 0.86 +0.2 291,047 + yraH BNILDI_01475 0.86 +0.4 291,047 + yraH BNILDI_01475 0.86 +0.1 291,047 + yraH BNILDI_01475 0.86 -2.6 291,048 - yraH BNILDI_01475 0.86 -0.0 291,051 + yraH BNILDI_01475 0.87 -1.5 291,052 - yraH BNILDI_01475 0.87 -1.6 291,125 + -1.0 291,128 + +0.6 291,129 - -0.9 291,202 + -0.5 291,309 + yraI BNILDI_01480 0.15 -0.6 291,310 - yraI BNILDI_01480 0.15 -1.8 291,393 - yraI BNILDI_01480 0.27 -0.2 291,397 + yraI BNILDI_01480 0.27 -1.1 291,398 - yraI BNILDI_01480 0.27 -0.2 291,701 + yraI BNILDI_01480 0.71 -3.3 291,702 - yraI BNILDI_01480 0.71 +0.8 291,801 - yraI BNILDI_01480 0.85 +2.1 291,808 + yraI BNILDI_01480 0.86 +0.6 291,809 - yraI BNILDI_01480 0.86 +0.1 291,809 - yraI BNILDI_01480 0.86 -2.4 291,811 + yraI BNILDI_01480 0.87 -3.6 291,907 + +0.5 291,907 + +1.4 292,059 - -0.5 292,062 - -0.2 292,088 - -0.4 292,157 + -1.2 292,263 + yraJ BNILDI_01485 0.13 +2.4 292,276 + yraJ BNILDI_01485 0.14 +1.6 292,394 - yraJ BNILDI_01485 0.18 +0.8 292,422 - yraJ BNILDI_01485 0.19 +0.2 292,440 - yraJ BNILDI_01485 0.20 -0.1 292,470 + yraJ BNILDI_01485 0.21 +0.4 292,470 + yraJ BNILDI_01485 0.21 -1.0 292,483 + yraJ BNILDI_01485 0.22 +0.9 292,491 - yraJ BNILDI_01485 0.22 -0.2 292,499 - yraJ BNILDI_01485 0.23 -0.8 292,499 - yraJ BNILDI_01485 0.23 +0.2 292,547 + yraJ BNILDI_01485 0.24 +1.0 292,556 - yraJ BNILDI_01485 0.25 +1.8 292,594 + yraJ BNILDI_01485 0.26 -0.4 292,594 + yraJ BNILDI_01485 0.26 +0.5 292,595 - yraJ BNILDI_01485 0.26 +0.4 292,595 - yraJ BNILDI_01485 0.26 +1.1 292,598 + yraJ BNILDI_01485 0.26 -0.6 292,598 + yraJ BNILDI_01485 0.26 -4.1 292,598 + yraJ BNILDI_01485 0.26 -1.7 292,598 + yraJ BNILDI_01485 0.26 -0.4 292,667 - yraJ BNILDI_01485 0.29 -0.2 292,733 + yraJ BNILDI_01485 0.32 -0.1 292,734 - yraJ BNILDI_01485 0.32 +0.6 292,734 - yraJ BNILDI_01485 0.32 +0.8 292,741 + yraJ BNILDI_01485 0.32 +0.3 292,771 + yraJ BNILDI_01485 0.33 -3.2 292,771 + yraJ BNILDI_01485 0.33 +0.3 292,771 + yraJ BNILDI_01485 0.33 -2.5 292,772 - yraJ BNILDI_01485 0.33 -0.2 292,772 - yraJ BNILDI_01485 0.33 +0.3 292,772 - yraJ BNILDI_01485 0.33 +0.5 292,772 - yraJ BNILDI_01485 0.33 +0.4 292,772 - yraJ BNILDI_01485 0.33 +0.2 292,860 - yraJ BNILDI_01485 0.37 +1.4 292,860 - yraJ BNILDI_01485 0.37 -0.8 292,868 + yraJ BNILDI_01485 0.37 +1.0 292,938 + yraJ BNILDI_01485 0.40 -3.4 293,029 - yraJ BNILDI_01485 0.44 +0.1 293,034 - yraJ BNILDI_01485 0.44 +0.2 293,112 + yraJ BNILDI_01485 0.47 +0.0 293,112 + yraJ BNILDI_01485 0.47 -0.2 293,112 + yraJ BNILDI_01485 0.47 +0.1 293,113 - yraJ BNILDI_01485 0.47 +2.3 293,113 - yraJ BNILDI_01485 0.47 +0.8 293,114 + yraJ BNILDI_01485 0.47 -1.4 293,114 + yraJ BNILDI_01485 0.47 +0.8 293,114 + yraJ BNILDI_01485 0.47 +1.0 293,115 - yraJ BNILDI_01485 0.47 +0.2 293,128 + yraJ BNILDI_01485 0.48 +0.3 293,141 + yraJ BNILDI_01485 0.48 -2.4 293,142 - yraJ BNILDI_01485 0.48 +0.7 293,142 - yraJ BNILDI_01485 0.48 -0.9 293,142 - yraJ BNILDI_01485 0.48 -0.1 293,168 + yraJ BNILDI_01485 0.49 -3.2 293,297 + yraJ BNILDI_01485 0.54 -1.2 293,297 + yraJ BNILDI_01485 0.54 +0.2 293,343 - yraJ BNILDI_01485 0.56 +0.2 293,346 - yraJ BNILDI_01485 0.56 -0.9 293,346 - yraJ BNILDI_01485 0.56 +1.8 293,352 - yraJ BNILDI_01485 0.56 +0.2 293,366 + yraJ BNILDI_01485 0.57 +0.4 293,367 - yraJ BNILDI_01485 0.57 -0.2 293,407 + yraJ BNILDI_01485 0.59 +0.2 293,407 + yraJ BNILDI_01485 0.59 -0.1 293,407 + yraJ BNILDI_01485 0.59 +0.4 293,454 + yraJ BNILDI_01485 0.60 +0.2 293,474 + yraJ BNILDI_01485 0.61 -1.7 293,475 - yraJ BNILDI_01485 0.61 -0.1 293,475 - yraJ BNILDI_01485 0.61 +0.8 293,498 + yraJ BNILDI_01485 0.62 -0.1 293,527 + yraJ BNILDI_01485 0.63 -0.2 293,528 - yraJ BNILDI_01485 0.63 +2.6 293,580 - yraJ BNILDI_01485 0.65 +0.8 293,580 - yraJ BNILDI_01485 0.65 -0.4 293,580 - yraJ BNILDI_01485 0.65 +0.3 293,585 + yraJ BNILDI_01485 0.66 +0.2 293,586 - yraJ BNILDI_01485 0.66 +0.6 293,608 + yraJ BNILDI_01485 0.67 -0.5 293,646 + yraJ BNILDI_01485 0.68 +0.1 293,647 - yraJ BNILDI_01485 0.68 -0.1 293,763 - yraJ BNILDI_01485 0.73 +0.9 293,764 + yraJ BNILDI_01485 0.73 -0.4 293,764 + yraJ BNILDI_01485 0.73 -0.3 293,800 + yraJ BNILDI_01485 0.74 -0.5 293,800 + yraJ BNILDI_01485 0.74 +0.2 293,800 + yraJ BNILDI_01485 0.74 +0.8 293,801 - yraJ BNILDI_01485 0.74 -3.2 293,806 + yraJ BNILDI_01485 0.74 +0.4 293,888 + yraJ BNILDI_01485 0.78 -0.5 293,942 + yraJ BNILDI_01485 0.80 +1.4 294,020 - yraJ BNILDI_01485 0.83 -0.1 294,051 - yraJ BNILDI_01485 0.84 +0.2 294,063 - yraJ BNILDI_01485 0.85 -0.0 294,063 - yraJ BNILDI_01485 0.85 +0.4 294,084 + yraJ BNILDI_01485 0.85 -1.0 294,088 + yraJ BNILDI_01485 0.86 -0.0 294,088 + yraJ BNILDI_01485 0.86 -0.2 294,088 + yraJ BNILDI_01485 0.86 +0.8 294,091 + yraJ BNILDI_01485 0.86 +0.6 294,198 + +0.3 294,205 + +0.0 294,205 + +0.2 294,206 - -0.0 294,300 + -3.2 294,303 + -1.8 294,303 + +1.6 294,303 + -2.4 294,303 + +0.7 294,304 - +1.9 294,304 - -0.7 294,305 + -0.0 294,306 - +0.8 294,306 - +0.4 294,326 - +0.3 294,345 + -0.2 294,346 - -3.2 294,346 - -1.6 294,388 + -1.3 294,388 + +2.0 294,391 + +1.9 294,420 + -0.1 294,421 - +0.7 294,423 + -0.0 294,423 + +0.1 294,423 + +0.6 294,424 - -2.6 294,424 - +0.6 294,476 + +0.2 294,476 + +1.0 294,476 + +1.1 294,477 - +0.1 294,478 + -0.2 294,514 - +1.8 294,565 - -0.4 294,626 + fimA BNILDI_01490 0.15 -1.5 294,640 + fimA BNILDI_01490 0.17 +0.4 294,641 - fimA BNILDI_01490 0.17 -0.6 294,644 + fimA BNILDI_01490 0.17 -0.9 294,645 - fimA BNILDI_01490 0.17 -2.7 294,645 - fimA BNILDI_01490 0.17 -2.4 294,703 - fimA BNILDI_01490 0.22 -0.2 294,703 - fimA BNILDI_01490 0.22 +0.8 294,703 - fimA BNILDI_01490 0.22 -0.4 294,703 - fimA BNILDI_01490 0.22 +0.6 294,703 - fimA BNILDI_01490 0.22 -0.2 294,705 - fimA BNILDI_01490 0.23 +1.0 294,718 + fimA BNILDI_01490 0.24 -0.6 294,723 - fimA BNILDI_01490 0.24 +0.2 294,723 - fimA BNILDI_01490 0.24 +0.5 294,723 - fimA BNILDI_01490 0.24 +0.3 294,751 - fimA BNILDI_01490 0.27 -0.1 294,776 + fimA BNILDI_01490 0.29 +0.7 294,777 - fimA BNILDI_01490 0.29 -2.6 294,787 + fimA BNILDI_01490 0.30 -0.3 294,787 + fimA BNILDI_01490 0.30 +0.7 294,856 + fimA BNILDI_01490 0.36 -0.8 294,857 - fimA BNILDI_01490 0.36 -2.6 294,857 - fimA BNILDI_01490 0.36 +1.4 294,872 - fimA BNILDI_01490 0.38 +0.3 294,947 + fimA BNILDI_01490 0.45 +0.1 294,948 - fimA BNILDI_01490 0.45 +0.9 294,964 - fimA BNILDI_01490 0.46 -0.0 295,023 - fimA BNILDI_01490 0.52 -0.1 295,079 - fimA BNILDI_01490 0.57 -1.0 295,145 + fimA BNILDI_01490 0.63 -0.4 295,145 + fimA BNILDI_01490 0.63 +0.4 295,146 - fimA BNILDI_01490 0.63 -2.8 295,149 - fimA BNILDI_01490 0.63 -0.8 295,149 - fimA BNILDI_01490 0.63 +1.4 295,154 + fimA BNILDI_01490 0.64 -1.4 295,214 + fimA BNILDI_01490 0.69 +1.4 295,239 + fimA BNILDI_01490 0.71 -0.5 295,239 + fimA BNILDI_01490 0.71 -0.1 295,240 - fimA BNILDI_01490 0.72 +1.2 295,240 - fimA BNILDI_01490 0.72 +0.4 295,240 - fimA BNILDI_01490 0.72 -0.5 295,310 - fimA BNILDI_01490 0.78 +0.6 295,310 - fimA BNILDI_01490 0.78 -0.3 295,403 + fimA BNILDI_01490 0.86 +0.1 295,403 + fimA BNILDI_01490 0.86 +1.4
Or see this region's nucleotide sequence