Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ygjR and alx are separated by 282 nucleotides alx and sstT are separated by 615 nucleotides
BNILDI_01170: ygjR - Uncharacterized oxidoreductase YgjR, at 230,508 to 231,494
ygjR
BNILDI_01175: alx - TerC family membrane protein Alx, at 231,777 to 232,742
alx
BNILDI_01180: sstT - serine/threonine transporter SstT, at 233,358 to 234,602
sstT
Position (kb) 231
232
233 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 230.870 kb on + strand, within ygjR at 230.961 kb on + strand, within ygjR at 231.011 kb on + strand, within ygjR at 231.039 kb on - strand, within ygjR at 231.055 kb on - strand, within ygjR at 231.134 kb on - strand, within ygjR at 231.333 kb on - strand, within ygjR at 231.333 kb on - strand, within ygjR at 231.333 kb on - strand, within ygjR at 231.335 kb on + strand, within ygjR at 231.335 kb on + strand, within ygjR at 231.335 kb on + strand, within ygjR at 231.335 kb on + strand, within ygjR at 231.335 kb on + strand, within ygjR at 231.335 kb on + strand, within ygjR at 231.335 kb on + strand, within ygjR at 231.335 kb on + strand, within ygjR at 231.336 kb on - strand, within ygjR at 231.336 kb on - strand, within ygjR at 231.336 kb on - strand, within ygjR at 231.338 kb on + strand, within ygjR at 231.339 kb on - strand, within ygjR at 231.348 kb on + strand, within ygjR at 231.525 kb on + strand at 231.566 kb on + strand at 231.583 kb on - strand at 231.682 kb on + strand at 231.683 kb on - strand at 231.683 kb on - strand at 231.711 kb on + strand at 231.712 kb on - strand at 231.717 kb on + strand at 231.765 kb on + strand at 231.765 kb on + strand at 231.766 kb on - strand at 231.776 kb on + strand at 231.776 kb on + strand at 231.776 kb on + strand at 231.776 kb on + strand at 231.776 kb on + strand at 231.783 kb on - strand at 231.803 kb on - strand at 232.105 kb on + strand, within alx at 232.106 kb on - strand, within alx at 232.209 kb on + strand, within alx at 232.210 kb on - strand, within alx at 232.211 kb on + strand, within alx at 232.212 kb on - strand, within alx at 232.530 kb on + strand, within alx at 232.632 kb on + strand, within alx at 232.632 kb on + strand, within alx at 232.633 kb on - strand, within alx at 232.637 kb on + strand, within alx at 232.691 kb on + strand at 232.750 kb on + strand at 232.752 kb on + strand at 232.752 kb on + strand at 232.755 kb on + strand at 232.772 kb on + strand at 232.772 kb on + strand at 232.773 kb on - strand at 232.798 kb on - strand at 232.800 kb on + strand at 232.801 kb on - strand at 232.801 kb on - strand at 232.804 kb on + strand at 232.804 kb on + strand at 232.808 kb on + strand at 232.809 kb on - strand at 232.809 kb on - strand at 232.820 kb on - strand at 232.827 kb on + strand at 232.827 kb on + strand at 232.828 kb on - strand at 232.828 kb on - strand at 232.935 kb on + strand at 233.072 kb on + strand at 233.072 kb on + strand at 233.074 kb on + strand at 233.081 kb on + strand at 233.089 kb on + strand at 233.111 kb on + strand at 233.132 kb on + strand at 233.132 kb on + strand at 233.132 kb on + strand at 233.132 kb on + strand at 233.132 kb on + strand at 233.133 kb on - strand at 233.133 kb on - strand at 233.137 kb on + strand at 233.141 kb on + strand at 233.152 kb on - strand at 233.254 kb on + strand at 233.383 kb on + strand at 233.413 kb on + strand at 233.495 kb on - strand, within sstT at 233.495 kb on - strand, within sstT at 233.498 kb on + strand, within sstT at 233.498 kb on + strand, within sstT at 233.564 kb on + strand, within sstT at 233.564 kb on + strand, within sstT at 233.565 kb on - strand, within sstT at 233.565 kb on - strand, within sstT at 233.565 kb on - strand, within sstT at 233.620 kb on - strand, within sstT
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 230,870 + ygjR BNILDI_01170 0.37 +0.8 230,961 + ygjR BNILDI_01170 0.46 +0.4 231,011 + ygjR BNILDI_01170 0.51 -0.8 231,039 - ygjR BNILDI_01170 0.54 -0.5 231,055 - ygjR BNILDI_01170 0.55 +0.6 231,134 - ygjR BNILDI_01170 0.63 +0.0 231,333 - ygjR BNILDI_01170 0.84 -0.2 231,333 - ygjR BNILDI_01170 0.84 -0.7 231,333 - ygjR BNILDI_01170 0.84 -0.4 231,335 + ygjR BNILDI_01170 0.84 +0.5 231,335 + ygjR BNILDI_01170 0.84 +0.1 231,335 + ygjR BNILDI_01170 0.84 +1.5 231,335 + ygjR BNILDI_01170 0.84 +0.1 231,335 + ygjR BNILDI_01170 0.84 +0.4 231,335 + ygjR BNILDI_01170 0.84 -3.3 231,335 + ygjR BNILDI_01170 0.84 -0.0 231,335 + ygjR BNILDI_01170 0.84 +0.3 231,336 - ygjR BNILDI_01170 0.84 -0.7 231,336 - ygjR BNILDI_01170 0.84 -0.8 231,336 - ygjR BNILDI_01170 0.84 -0.1 231,338 + ygjR BNILDI_01170 0.84 +0.9 231,339 - ygjR BNILDI_01170 0.84 +0.2 231,348 + ygjR BNILDI_01170 0.85 -1.3 231,525 + -1.4 231,566 + -0.5 231,583 - +0.2 231,682 + -0.1 231,683 - -0.9 231,683 - +0.3 231,711 + +0.1 231,712 - -0.9 231,717 + +0.5 231,765 + +1.1 231,765 + -2.2 231,766 - -1.4 231,776 + -1.9 231,776 + +0.6 231,776 + -1.2 231,776 + -2.2 231,776 + +2.2 231,783 - -0.3 231,803 - -0.8 232,105 + alx BNILDI_01175 0.34 -0.2 232,106 - alx BNILDI_01175 0.34 +1.3 232,209 + alx BNILDI_01175 0.45 -0.9 232,210 - alx BNILDI_01175 0.45 +0.5 232,211 + alx BNILDI_01175 0.45 +0.0 232,212 - alx BNILDI_01175 0.45 +0.4 232,530 + alx BNILDI_01175 0.78 -2.8 232,632 + alx BNILDI_01175 0.89 -0.6 232,632 + alx BNILDI_01175 0.89 -0.5 232,633 - alx BNILDI_01175 0.89 -0.5 232,637 + alx BNILDI_01175 0.89 +0.1 232,691 + -0.2 232,750 + +0.0 232,752 + -2.4 232,752 + -0.0 232,755 + +0.3 232,772 + -0.4 232,772 + -0.2 232,773 - +1.1 232,798 - -0.5 232,800 + +0.7 232,801 - +0.4 232,801 - +0.7 232,804 + +0.8 232,804 + +0.8 232,808 + -0.1 232,809 - -0.2 232,809 - +0.3 232,820 - +0.1 232,827 + -1.8 232,827 + +0.3 232,828 - +0.4 232,828 - +1.6 232,935 + -1.0 233,072 + +0.1 233,072 + +0.2 233,074 + -1.5 233,081 + +0.3 233,089 + +0.5 233,111 + +1.4 233,132 + -2.4 233,132 + -2.4 233,132 + +1.5 233,132 + +0.3 233,132 + -0.1 233,133 - +0.8 233,133 - -0.6 233,137 + +0.5 233,141 + +0.1 233,152 - -2.2 233,254 + +0.1 233,383 + -0.9 233,413 + +0.6 233,495 - sstT BNILDI_01180 0.11 -0.5 233,495 - sstT BNILDI_01180 0.11 +0.2 233,498 + sstT BNILDI_01180 0.11 -0.5 233,498 + sstT BNILDI_01180 0.11 +0.5 233,564 + sstT BNILDI_01180 0.17 +1.3 233,564 + sstT BNILDI_01180 0.17 +0.2 233,565 - sstT BNILDI_01180 0.17 -0.0 233,565 - sstT BNILDI_01180 0.17 -0.0 233,565 - sstT BNILDI_01180 0.17 -0.0 233,620 - sstT BNILDI_01180 0.21 -1.6
Or see this region's nucleotide sequence