Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt qseC and ygiZ are separated by 45 nucleotides ygiZ and mdaB are separated by 318 nucleotides mdaB and ygiN are separated by 30 nucleotides
BNILDI_00860: qseC - two-component system sensor histidine kinase QseC, at 165,484 to 166,833
qseC
BNILDI_00865: ygiZ - Inner membrane protein YgiZ, at 166,879 to 167,211
ygiZ
BNILDI_00870: mdaB - NADPH:quinone oxidoreductase MdaB, at 167,530 to 168,111
mdaB
BNILDI_00875: ygiN - putative quinol monooxygenase YgiN, at 168,142 to 168,456
ygiN
Position (kb) 166
167
168 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 166.022 kb on + strand, within qseC at 166.025 kb on + strand, within qseC at 166.203 kb on + strand, within qseC at 166.203 kb on + strand, within qseC at 166.226 kb on + strand, within qseC at 166.227 kb on - strand, within qseC at 166.230 kb on + strand, within qseC at 166.456 kb on + strand, within qseC at 166.456 kb on + strand, within qseC at 166.541 kb on + strand, within qseC at 166.541 kb on + strand, within qseC at 166.541 kb on + strand, within qseC at 166.823 kb on + strand at 166.831 kb on + strand at 166.832 kb on - strand at 166.845 kb on - strand at 166.877 kb on + strand at 166.880 kb on + strand at 166.880 kb on + strand at 167.005 kb on - strand, within ygiZ at 167.077 kb on + strand, within ygiZ at 167.164 kb on + strand, within ygiZ at 167.492 kb on + strand at 167.492 kb on + strand at 167.493 kb on - strand at 167.495 kb on + strand at 167.495 kb on + strand at 167.495 kb on + strand at 167.495 kb on + strand at 167.497 kb on + strand at 167.772 kb on + strand, within mdaB at 167.773 kb on - strand, within mdaB at 167.783 kb on + strand, within mdaB at 167.783 kb on + strand, within mdaB at 167.884 kb on + strand, within mdaB at 167.885 kb on - strand, within mdaB at 167.971 kb on + strand, within mdaB at 167.972 kb on - strand, within mdaB at 168.027 kb on + strand, within mdaB at 168.028 kb on - strand, within mdaB at 168.114 kb on - strand at 168.127 kb on + strand at 168.127 kb on + strand at 168.128 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 166,022 + qseC BNILDI_00860 0.40 -0.9 166,025 + qseC BNILDI_00860 0.40 -0.1 166,203 + qseC BNILDI_00860 0.53 +1.1 166,203 + qseC BNILDI_00860 0.53 +2.1 166,226 + qseC BNILDI_00860 0.55 +0.0 166,227 - qseC BNILDI_00860 0.55 +0.3 166,230 + qseC BNILDI_00860 0.55 -1.9 166,456 + qseC BNILDI_00860 0.72 -0.7 166,456 + qseC BNILDI_00860 0.72 -0.4 166,541 + qseC BNILDI_00860 0.78 -0.1 166,541 + qseC BNILDI_00860 0.78 +2.2 166,541 + qseC BNILDI_00860 0.78 -0.4 166,823 + -0.2 166,831 + -3.2 166,832 - +0.9 166,845 - +0.1 166,877 + +0.1 166,880 + +0.7 166,880 + -0.5 167,005 - ygiZ BNILDI_00865 0.38 -1.5 167,077 + ygiZ BNILDI_00865 0.59 -0.5 167,164 + ygiZ BNILDI_00865 0.86 +0.1 167,492 + +0.0 167,492 + -2.9 167,493 - +1.0 167,495 + -0.2 167,495 + +0.9 167,495 + -4.0 167,495 + -0.9 167,497 + +1.0 167,772 + mdaB BNILDI_00870 0.42 -3.1 167,773 - mdaB BNILDI_00870 0.42 +0.2 167,783 + mdaB BNILDI_00870 0.43 +2.9 167,783 + mdaB BNILDI_00870 0.43 +0.0 167,884 + mdaB BNILDI_00870 0.61 +0.1 167,885 - mdaB BNILDI_00870 0.61 -1.8 167,971 + mdaB BNILDI_00870 0.76 +0.8 167,972 - mdaB BNILDI_00870 0.76 +1.0 168,027 + mdaB BNILDI_00870 0.85 -0.3 168,028 - mdaB BNILDI_00870 0.86 +0.3 168,114 - +2.1 168,127 + -0.3 168,127 + +1.0 168,128 - -0.6
Or see this region's nucleotide sequence