Strain Fitness in Escherichia coli ECRC62 around BNILDI_00210

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBNILDI_00195 and BNILDI_00200 are separated by 1 nucleotidesBNILDI_00200 and BNILDI_00205 overlap by 29 nucleotidesBNILDI_00205 and BNILDI_00210 are separated by 41 nucleotidesBNILDI_00210 and BNILDI_00215 are separated by 11 nucleotidesBNILDI_00215 and BNILDI_00220 are separated by 53 nucleotidesBNILDI_00220 and BNILDI_00225 are separated by 19 nucleotides BNILDI_00195: BNILDI_00195 - hypothetical protein, at 46,755 to 47,093 _00195 BNILDI_00200: BNILDI_00200 - hypothetical protein, at 47,095 to 47,505 _00200 BNILDI_00205: BNILDI_00205 - hypothetical protein, at 47,477 to 47,596 _00205 BNILDI_00210: BNILDI_00210 - hypothetical protein, at 47,638 to 47,913 _00210 BNILDI_00215: BNILDI_00215 - Transcriptional regulator, at 47,925 to 48,614 _00215 BNILDI_00220: BNILDI_00220 - putative protein, at 48,668 to 48,838 _00220 BNILDI_00225: BNILDI_00225 - hypothetical protein, at 48,858 to 49,046 _00225 Position (kb) 47 48Strain fitness (log2 ratio) -2 -1 0 1 2at 46.697 kb on - strandat 46.791 kb on + strand, within BNILDI_00195at 46.791 kb on + strand, within BNILDI_00195at 46.792 kb on - strand, within BNILDI_00195at 46.812 kb on + strand, within BNILDI_00195at 46.812 kb on + strand, within BNILDI_00195at 46.813 kb on - strand, within BNILDI_00195at 46.813 kb on - strand, within BNILDI_00195at 46.813 kb on - strand, within BNILDI_00195at 46.813 kb on - strand, within BNILDI_00195at 46.816 kb on + strand, within BNILDI_00195at 46.816 kb on + strand, within BNILDI_00195at 46.816 kb on + strand, within BNILDI_00195at 46.816 kb on + strand, within BNILDI_00195at 46.835 kb on + strand, within BNILDI_00195at 46.842 kb on + strand, within BNILDI_00195at 46.842 kb on + strand, within BNILDI_00195at 46.854 kb on + strand, within BNILDI_00195at 46.882 kb on + strand, within BNILDI_00195at 46.882 kb on + strand, within BNILDI_00195at 46.920 kb on - strand, within BNILDI_00195at 46.974 kb on + strand, within BNILDI_00195at 47.000 kb on - strand, within BNILDI_00195at 47.825 kb on + strand, within BNILDI_00210at 48.014 kb on + strand, within BNILDI_00215at 48.102 kb on + strand, within BNILDI_00215at 48.105 kb on + strand, within BNILDI_00215at 48.106 kb on - strand, within BNILDI_00215at 48.227 kb on + strand, within BNILDI_00215at 48.228 kb on - strand, within BNILDI_00215at 48.294 kb on - strand, within BNILDI_00215at 48.294 kb on - strand, within BNILDI_00215at 48.294 kb on - strand, within BNILDI_00215at 48.485 kb on + strand, within BNILDI_00215

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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46,697 - +0.1
46,791 + BNILDI_00195 0.11 +0.3
46,791 + BNILDI_00195 0.11 -1.9
46,792 - BNILDI_00195 0.11 +1.6
46,812 + BNILDI_00195 0.17 -0.0
46,812 + BNILDI_00195 0.17 -0.6
46,813 - BNILDI_00195 0.17 +0.3
46,813 - BNILDI_00195 0.17 -0.6
46,813 - BNILDI_00195 0.17 +0.7
46,813 - BNILDI_00195 0.17 -0.8
46,816 + BNILDI_00195 0.18 +0.3
46,816 + BNILDI_00195 0.18 +0.2
46,816 + BNILDI_00195 0.18 -0.3
46,816 + BNILDI_00195 0.18 +0.7
46,835 + BNILDI_00195 0.24 +1.0
46,842 + BNILDI_00195 0.26 +0.3
46,842 + BNILDI_00195 0.26 +0.4
46,854 + BNILDI_00195 0.29 +0.5
46,882 + BNILDI_00195 0.37 -1.7
46,882 + BNILDI_00195 0.37 -1.1
46,920 - BNILDI_00195 0.49 +2.1
46,974 + BNILDI_00195 0.65 +0.0
47,000 - BNILDI_00195 0.72 +0.3
47,825 + BNILDI_00210 0.68 -2.2
48,014 + BNILDI_00215 0.13 +0.0
48,102 + BNILDI_00215 0.26 +0.2
48,105 + BNILDI_00215 0.26 +0.4
48,106 - BNILDI_00215 0.26 +0.3
48,227 + BNILDI_00215 0.44 +0.7
48,228 - BNILDI_00215 0.44 -1.1
48,294 - BNILDI_00215 0.53 -0.0
48,294 - BNILDI_00215 0.53 +0.5
48,294 - BNILDI_00215 0.53 +1.2
48,485 + BNILDI_00215 0.81 -0.6

Or see this region's nucleotide sequence