Strain Fitness in Escherichia coli ECRC62 around BNILDI_00155

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpaoC and paoD are separated by 9 nucleotidespaoD and yagP overlap by 22 nucleotidesyagP and BNILDI_00160 are separated by 231 nucleotides BNILDI_00145: paoC - aldehyde oxidoreductase molybdenum-binding subunit PaoC, at 36,718 to 38,916 paoC BNILDI_00150: paoD - molybdenum cofactor insertion chaperone PaoD, at 38,926 to 39,882 paoD BNILDI_00155: yagP - Putative LysR family substrate binding domain-containing protein YagP, at 39,861 to 40,271 yagP BNILDI_00160: BNILDI_00160 - integrase, at 40,503 to 41,837 _00160 Position (kb) 39 40 41Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 38.895 kb on + strandat 38.964 kb on + strandat 38.964 kb on + strandat 39.526 kb on + strand, within paoDat 39.526 kb on + strand, within paoDat 39.527 kb on - strand, within paoDat 39.538 kb on - strand, within paoDat 39.664 kb on + strand, within paoDat 39.702 kb on - strand, within paoDat 39.798 kb on + strandat 39.836 kb on + strandat 39.836 kb on + strandat 39.837 kb on - strandat 39.837 kb on - strandat 39.837 kb on - strandat 39.935 kb on + strand, within yagPat 39.935 kb on + strand, within yagPat 39.935 kb on + strand, within yagPat 39.936 kb on - strand, within yagPat 39.936 kb on - strand, within yagPat 40.120 kb on - strand, within yagPat 40.121 kb on + strand, within yagPat 40.122 kb on - strand, within yagPat 40.182 kb on + strand, within yagPat 40.182 kb on + strand, within yagPat 40.182 kb on + strand, within yagPat 40.182 kb on + strand, within yagPat 40.182 kb on + strand, within yagPat 40.183 kb on - strand, within yagPat 40.239 kb on + strandat 40.240 kb on - strandat 40.274 kb on - strandat 40.328 kb on + strandat 40.328 kb on + strandat 40.328 kb on + strandat 40.329 kb on - strandat 40.503 kb on - strandat 40.510 kb on - strandat 40.527 kb on + strandat 40.566 kb on + strandat 40.567 kb on - strandat 40.585 kb on + strandat 40.586 kb on - strandat 40.599 kb on + strandat 40.608 kb on + strandat 40.609 kb on - strandat 40.611 kb on + strandat 40.612 kb on - strandat 40.615 kb on + strandat 40.615 kb on + strandat 40.615 kb on + strandat 40.636 kb on - strandat 40.637 kb on + strand, within BNILDI_00160at 40.638 kb on - strand, within BNILDI_00160at 40.638 kb on - strand, within BNILDI_00160at 40.638 kb on - strand, within BNILDI_00160at 40.691 kb on + strand, within BNILDI_00160at 40.691 kb on + strand, within BNILDI_00160at 40.692 kb on - strand, within BNILDI_00160at 40.692 kb on - strand, within BNILDI_00160at 40.692 kb on - strand, within BNILDI_00160at 40.692 kb on - strand, within BNILDI_00160at 40.692 kb on - strand, within BNILDI_00160at 40.709 kb on + strand, within BNILDI_00160at 40.710 kb on - strand, within BNILDI_00160at 40.748 kb on - strand, within BNILDI_00160at 40.768 kb on + strand, within BNILDI_00160at 40.768 kb on + strand, within BNILDI_00160at 40.780 kb on + strand, within BNILDI_00160at 40.814 kb on + strand, within BNILDI_00160at 40.814 kb on + strand, within BNILDI_00160at 40.814 kb on + strand, within BNILDI_00160at 40.848 kb on - strand, within BNILDI_00160at 40.848 kb on - strand, within BNILDI_00160at 40.848 kb on - strand, within BNILDI_00160at 40.901 kb on + strand, within BNILDI_00160at 40.930 kb on + strand, within BNILDI_00160at 40.930 kb on + strand, within BNILDI_00160at 40.930 kb on + strand, within BNILDI_00160at 40.974 kb on - strand, within BNILDI_00160at 41.096 kb on - strand, within BNILDI_00160at 41.162 kb on + strand, within BNILDI_00160at 41.163 kb on - strand, within BNILDI_00160at 41.193 kb on + strand, within BNILDI_00160at 41.218 kb on + strand, within BNILDI_00160at 41.218 kb on + strand, within BNILDI_00160at 41.219 kb on - strand, within BNILDI_00160at 41.236 kb on + strand, within BNILDI_00160

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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38,895 + +0.4
38,964 + -0.4
38,964 + -0.2
39,526 + paoD BNILDI_00150 0.63 +0.5
39,526 + paoD BNILDI_00150 0.63 +0.6
39,527 - paoD BNILDI_00150 0.63 +0.8
39,538 - paoD BNILDI_00150 0.64 -0.2
39,664 + paoD BNILDI_00150 0.77 -1.1
39,702 - paoD BNILDI_00150 0.81 -0.8
39,798 + +2.1
39,836 + -3.4
39,836 + +0.1
39,837 - -0.1
39,837 - -0.6
39,837 - -0.8
39,935 + yagP BNILDI_00155 0.18 +0.4
39,935 + yagP BNILDI_00155 0.18 +0.6
39,935 + yagP BNILDI_00155 0.18 +0.4
39,936 - yagP BNILDI_00155 0.18 -1.2
39,936 - yagP BNILDI_00155 0.18 +0.0
40,120 - yagP BNILDI_00155 0.63 +1.4
40,121 + yagP BNILDI_00155 0.63 +0.3
40,122 - yagP BNILDI_00155 0.64 -0.7
40,182 + yagP BNILDI_00155 0.78 -0.3
40,182 + yagP BNILDI_00155 0.78 -1.2
40,182 + yagP BNILDI_00155 0.78 -3.0
40,182 + yagP BNILDI_00155 0.78 +2.1
40,182 + yagP BNILDI_00155 0.78 -2.5
40,183 - yagP BNILDI_00155 0.78 -0.1
40,239 + -0.6
40,240 - +0.8
40,274 - -0.1
40,328 + +1.0
40,328 + -0.9
40,328 + -1.6
40,329 - -0.1
40,503 - -4.6
40,510 - -2.4
40,527 + -2.9
40,566 + +0.9
40,567 - +0.6
40,585 + +1.2
40,586 - -1.6
40,599 + +2.5
40,608 + +0.1
40,609 - +0.3
40,611 + +1.2
40,612 - +1.1
40,615 + +0.9
40,615 + -0.6
40,615 + -0.4
40,636 - +1.0
40,637 + BNILDI_00160 0.10 -0.2
40,638 - BNILDI_00160 0.10 +0.5
40,638 - BNILDI_00160 0.10 -0.0
40,638 - BNILDI_00160 0.10 -1.2
40,691 + BNILDI_00160 0.14 +1.2
40,691 + BNILDI_00160 0.14 +0.5
40,692 - BNILDI_00160 0.14 +0.1
40,692 - BNILDI_00160 0.14 -0.5
40,692 - BNILDI_00160 0.14 -0.4
40,692 - BNILDI_00160 0.14 -0.7
40,692 - BNILDI_00160 0.14 -0.7
40,709 + BNILDI_00160 0.15 -0.4
40,710 - BNILDI_00160 0.16 -1.3
40,748 - BNILDI_00160 0.18 -2.3
40,768 + BNILDI_00160 0.20 -0.1
40,768 + BNILDI_00160 0.20 -0.4
40,780 + BNILDI_00160 0.21 -2.0
40,814 + BNILDI_00160 0.23 +0.4
40,814 + BNILDI_00160 0.23 -0.7
40,814 + BNILDI_00160 0.23 +0.9
40,848 - BNILDI_00160 0.26 -0.8
40,848 - BNILDI_00160 0.26 +0.0
40,848 - BNILDI_00160 0.26 -1.9
40,901 + BNILDI_00160 0.30 -0.2
40,930 + BNILDI_00160 0.32 +0.2
40,930 + BNILDI_00160 0.32 +3.1
40,930 + BNILDI_00160 0.32 -1.7
40,974 - BNILDI_00160 0.35 +0.9
41,096 - BNILDI_00160 0.44 -0.9
41,162 + BNILDI_00160 0.49 +0.5
41,163 - BNILDI_00160 0.49 +0.1
41,193 + BNILDI_00160 0.52 +1.0
41,218 + BNILDI_00160 0.54 -0.1
41,218 + BNILDI_00160 0.54 +0.2
41,219 - BNILDI_00160 0.54 +1.0
41,236 + BNILDI_00160 0.55 +0.4

Or see this region's nucleotide sequence