Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hemB and tauD are separated by 105 nucleotides tauD and tauC overlap by 4 nucleotides tauC and tauB overlap by 4 nucleotides tauB and tauA are separated by 12 nucleotides
BNILDI_23020: hemB - porphobilinogen synthase, at 4,634,012 to 4,634,986
hemB
BNILDI_23025: tauD - taurine dioxygenase, at 4,635,092 to 4,635,943
tauD
BNILDI_23030: tauC - taurine ABC transporter permease TauC, at 4,635,940 to 4,636,767
tauC
BNILDI_23035: tauB - taurine ABC transporter ATP-binding subunit, at 4,636,764 to 4,637,531
tauB
BNILDI_23040: tauA - taurine ABC transporter substrate-binding protein, at 4,637,544 to 4,638,506
tauA
Position (kb) 4635
4636
4637 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4635.090 kb on + strand at 4635.115 kb on + strand at 4635.142 kb on + strand at 4635.163 kb on - strand at 4635.211 kb on + strand, within tauD at 4635.326 kb on - strand, within tauD at 4635.390 kb on - strand, within tauD at 4635.460 kb on - strand, within tauD at 4635.541 kb on - strand, within tauD at 4635.541 kb on - strand, within tauD at 4635.632 kb on - strand, within tauD at 4635.740 kb on - strand, within tauD at 4635.838 kb on - strand, within tauD at 4635.838 kb on - strand, within tauD at 4635.838 kb on - strand, within tauD at 4635.904 kb on + strand at 4635.906 kb on + strand at 4635.906 kb on + strand at 4635.946 kb on + strand at 4635.947 kb on - strand at 4635.980 kb on - strand at 4636.084 kb on - strand, within tauC at 4636.132 kb on - strand, within tauC at 4636.319 kb on + strand, within tauC at 4636.320 kb on - strand, within tauC at 4636.555 kb on - strand, within tauC at 4636.595 kb on - strand, within tauC at 4636.657 kb on + strand, within tauC at 4636.657 kb on + strand, within tauC at 4636.657 kb on + strand, within tauC at 4636.691 kb on - strand at 4636.792 kb on - strand at 4636.792 kb on - strand at 4636.950 kb on - strand, within tauB at 4636.965 kb on + strand, within tauB at 4636.966 kb on - strand, within tauB at 4637.079 kb on + strand, within tauB at 4637.079 kb on + strand, within tauB at 4637.083 kb on - strand, within tauB at 4637.157 kb on - strand, within tauB at 4637.157 kb on - strand, within tauB at 4637.232 kb on + strand, within tauB at 4637.233 kb on - strand, within tauB at 4637.235 kb on - strand, within tauB at 4637.271 kb on + strand, within tauB at 4637.271 kb on + strand, within tauB at 4637.272 kb on - strand, within tauB at 4637.272 kb on - strand, within tauB at 4637.272 kb on - strand, within tauB at 4637.510 kb on - strand at 4637.692 kb on + strand, within tauA at 4637.692 kb on + strand, within tauA at 4637.697 kb on - strand, within tauA at 4637.697 kb on - strand, within tauA at 4637.742 kb on + strand, within tauA
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 4,635,090 + -1.8 4,635,115 + +0.6 4,635,142 + -0.7 4,635,163 - -0.8 4,635,211 + tauD BNILDI_23025 0.14 +0.1 4,635,326 - tauD BNILDI_23025 0.27 -0.5 4,635,390 - tauD BNILDI_23025 0.35 +0.4 4,635,460 - tauD BNILDI_23025 0.43 +1.9 4,635,541 - tauD BNILDI_23025 0.53 -0.6 4,635,541 - tauD BNILDI_23025 0.53 -0.6 4,635,632 - tauD BNILDI_23025 0.63 +1.0 4,635,740 - tauD BNILDI_23025 0.76 +0.2 4,635,838 - tauD BNILDI_23025 0.88 -0.6 4,635,838 - tauD BNILDI_23025 0.88 -0.0 4,635,838 - tauD BNILDI_23025 0.88 +1.0 4,635,904 + -0.0 4,635,906 + +0.3 4,635,906 + +0.7 4,635,946 + -0.8 4,635,947 - -0.1 4,635,980 - -0.9 4,636,084 - tauC BNILDI_23030 0.17 +0.0 4,636,132 - tauC BNILDI_23030 0.23 +0.9 4,636,319 + tauC BNILDI_23030 0.46 -1.3 4,636,320 - tauC BNILDI_23030 0.46 +0.6 4,636,555 - tauC BNILDI_23030 0.74 -0.1 4,636,595 - tauC BNILDI_23030 0.79 +2.8 4,636,657 + tauC BNILDI_23030 0.87 -2.6 4,636,657 + tauC BNILDI_23030 0.87 -0.9 4,636,657 + tauC BNILDI_23030 0.87 +0.2 4,636,691 - +0.3 4,636,792 - -0.0 4,636,792 - +0.0 4,636,950 - tauB BNILDI_23035 0.24 +0.1 4,636,965 + tauB BNILDI_23035 0.26 +0.1 4,636,966 - tauB BNILDI_23035 0.26 +0.6 4,637,079 + tauB BNILDI_23035 0.41 +0.2 4,637,079 + tauB BNILDI_23035 0.41 -0.8 4,637,083 - tauB BNILDI_23035 0.42 +0.3 4,637,157 - tauB BNILDI_23035 0.51 -0.4 4,637,157 - tauB BNILDI_23035 0.51 +1.3 4,637,232 + tauB BNILDI_23035 0.61 -1.6 4,637,233 - tauB BNILDI_23035 0.61 -0.3 4,637,235 - tauB BNILDI_23035 0.61 -0.0 4,637,271 + tauB BNILDI_23035 0.66 +0.2 4,637,271 + tauB BNILDI_23035 0.66 +0.6 4,637,272 - tauB BNILDI_23035 0.66 +0.1 4,637,272 - tauB BNILDI_23035 0.66 +0.3 4,637,272 - tauB BNILDI_23035 0.66 -0.1 4,637,510 - -1.2 4,637,692 + tauA BNILDI_23040 0.15 +1.0 4,637,692 + tauA BNILDI_23040 0.15 -0.4 4,637,697 - tauA BNILDI_23040 0.16 +1.1 4,637,697 - tauA BNILDI_23040 0.16 -0.7 4,637,742 + tauA BNILDI_23040 0.21 +0.2
Or see this region's nucleotide sequence