Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt arcC and ylbF overlap by 4 nucleotides ylbF and ylbE are separated by 10 nucleotides
BNILDI_22265: arcC - carbamate kinase, at 4,472,968 to 4,473,861
arcC
BNILDI_22270: ylbF - Uncharacterized protein YlbF, at 4,473,858 to 4,474,673
ylbF
BNILDI_22275: ylbE - Uncharacterized protein YlbE, at 4,474,684 to 4,475,943
ylbE
Position (kb) 4473
4474
4475 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4472.912 kb on - strand at 4472.921 kb on - strand at 4472.970 kb on - strand at 4473.603 kb on + strand, within arcC at 4473.604 kb on - strand, within arcC at 4473.604 kb on - strand, within arcC at 4473.604 kb on - strand, within arcC at 4473.604 kb on - strand, within arcC at 4473.604 kb on - strand, within arcC at 4473.606 kb on - strand, within arcC at 4473.659 kb on - strand, within arcC at 4473.845 kb on - strand at 4473.845 kb on - strand at 4473.845 kb on - strand at 4473.874 kb on - strand at 4473.876 kb on + strand at 4473.877 kb on - strand at 4473.923 kb on + strand at 4473.923 kb on + strand at 4473.924 kb on - strand at 4473.924 kb on - strand at 4473.963 kb on - strand, within ylbF at 4474.030 kb on + strand, within ylbF at 4474.035 kb on + strand, within ylbF at 4474.035 kb on + strand, within ylbF at 4474.036 kb on - strand, within ylbF at 4474.036 kb on - strand, within ylbF at 4474.039 kb on + strand, within ylbF at 4474.127 kb on - strand, within ylbF at 4474.376 kb on + strand, within ylbF at 4474.379 kb on + strand, within ylbF at 4474.471 kb on - strand, within ylbF at 4474.819 kb on - strand, within ylbE at 4474.936 kb on + strand, within ylbE at 4475.160 kb on + strand, within ylbE at 4475.161 kb on - strand, within ylbE at 4475.310 kb on + strand, within ylbE at 4475.310 kb on + strand, within ylbE at 4475.354 kb on - strand, within ylbE at 4475.354 kb on - strand, within ylbE at 4475.573 kb on + strand, within ylbE at 4475.574 kb on - strand, within ylbE at 4475.574 kb on - strand, within ylbE at 4475.620 kb on - strand, within ylbE at 4475.631 kb on + strand, within ylbE at 4475.631 kb on + strand, within ylbE at 4475.632 kb on - strand, within ylbE at 4475.632 kb on - strand, within ylbE
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 4,472,912 - +1.0 4,472,921 - +0.5 4,472,970 - -2.6 4,473,603 + arcC BNILDI_22265 0.71 -0.2 4,473,604 - arcC BNILDI_22265 0.71 +0.3 4,473,604 - arcC BNILDI_22265 0.71 -1.7 4,473,604 - arcC BNILDI_22265 0.71 +0.1 4,473,604 - arcC BNILDI_22265 0.71 +0.8 4,473,604 - arcC BNILDI_22265 0.71 +0.2 4,473,606 - arcC BNILDI_22265 0.71 +1.0 4,473,659 - arcC BNILDI_22265 0.77 +0.8 4,473,845 - +0.4 4,473,845 - -0.6 4,473,845 - -2.1 4,473,874 - +0.2 4,473,876 + +0.3 4,473,877 - +0.3 4,473,923 + -0.1 4,473,923 + +0.6 4,473,924 - +0.3 4,473,924 - +0.0 4,473,963 - ylbF BNILDI_22270 0.13 +2.0 4,474,030 + ylbF BNILDI_22270 0.21 +0.1 4,474,035 + ylbF BNILDI_22270 0.22 -0.8 4,474,035 + ylbF BNILDI_22270 0.22 +0.6 4,474,036 - ylbF BNILDI_22270 0.22 +0.2 4,474,036 - ylbF BNILDI_22270 0.22 -0.4 4,474,039 + ylbF BNILDI_22270 0.22 +0.6 4,474,127 - ylbF BNILDI_22270 0.33 +0.3 4,474,376 + ylbF BNILDI_22270 0.63 +0.6 4,474,379 + ylbF BNILDI_22270 0.64 -1.9 4,474,471 - ylbF BNILDI_22270 0.75 +1.1 4,474,819 - ylbE BNILDI_22275 0.11 +0.1 4,474,936 + ylbE BNILDI_22275 0.20 +0.2 4,475,160 + ylbE BNILDI_22275 0.38 -2.6 4,475,161 - ylbE BNILDI_22275 0.38 +1.5 4,475,310 + ylbE BNILDI_22275 0.50 -3.1 4,475,310 + ylbE BNILDI_22275 0.50 -0.0 4,475,354 - ylbE BNILDI_22275 0.53 -0.3 4,475,354 - ylbE BNILDI_22275 0.53 +0.2 4,475,573 + ylbE BNILDI_22275 0.71 -0.3 4,475,574 - ylbE BNILDI_22275 0.71 +0.1 4,475,574 - ylbE BNILDI_22275 0.71 +0.5 4,475,620 - ylbE BNILDI_22275 0.74 +0.7 4,475,631 + ylbE BNILDI_22275 0.75 +0.6 4,475,631 + ylbE BNILDI_22275 0.75 +0.7 4,475,632 - ylbE BNILDI_22275 0.75 +0.6 4,475,632 - ylbE BNILDI_22275 0.75 +2.6
Or see this region's nucleotide sequence