Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fimH and sfmD are separated by 158 nucleotides sfmD and fimC are separated by 30 nucleotides fimC and fimA are separated by 219 nucleotides
BNILDI_22205: fimH - type 1 fimbria D-mannose specific adhesin FimH, at 4,460,965 to 4,461,972
fimH
BNILDI_22210: sfmD - Outer membrane usher protein SfmD, at 4,462,131 to 4,464,593
sfmD
BNILDI_22215: fimC - type 1 fimbria chaperone FimC, at 4,464,624 to 4,465,316
fimC
BNILDI_22220: fimA - type 1 fimbrial major subunit FimA, at 4,465,536 to 4,466,078
fimA
Position (kb) 4462
4463
4464
4465 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4461.224 kb on + strand, within fimH at 4461.224 kb on + strand, within fimH at 4461.412 kb on - strand, within fimH at 4461.419 kb on + strand, within fimH at 4461.462 kb on - strand, within fimH at 4461.661 kb on + strand, within fimH at 4461.906 kb on + strand at 4461.977 kb on - strand at 4461.977 kb on - strand at 4462.055 kb on - strand at 4462.058 kb on + strand at 4462.058 kb on + strand at 4462.059 kb on - strand at 4462.132 kb on + strand at 4462.137 kb on - strand at 4462.161 kb on - strand at 4462.161 kb on - strand at 4462.343 kb on + strand at 4462.343 kb on + strand at 4462.447 kb on - strand, within sfmD at 4462.576 kb on + strand, within sfmD at 4462.582 kb on + strand, within sfmD at 4462.604 kb on - strand, within sfmD at 4462.638 kb on - strand, within sfmD at 4462.638 kb on - strand, within sfmD at 4462.638 kb on - strand, within sfmD at 4462.639 kb on + strand, within sfmD at 4462.640 kb on - strand, within sfmD at 4462.655 kb on + strand, within sfmD at 4462.656 kb on - strand, within sfmD at 4462.711 kb on - strand, within sfmD at 4462.727 kb on + strand, within sfmD at 4462.768 kb on + strand, within sfmD at 4462.769 kb on - strand, within sfmD at 4462.839 kb on - strand, within sfmD at 4462.839 kb on - strand, within sfmD at 4462.851 kb on - strand, within sfmD at 4462.904 kb on - strand, within sfmD at 4462.904 kb on - strand, within sfmD at 4462.942 kb on + strand, within sfmD at 4462.965 kb on - strand, within sfmD at 4462.995 kb on - strand, within sfmD at 4462.995 kb on - strand, within sfmD at 4462.996 kb on + strand, within sfmD at 4462.997 kb on - strand, within sfmD at 4463.114 kb on - strand, within sfmD at 4463.125 kb on + strand, within sfmD at 4463.125 kb on + strand, within sfmD at 4463.171 kb on - strand, within sfmD at 4463.242 kb on + strand, within sfmD at 4463.287 kb on - strand, within sfmD at 4463.371 kb on + strand, within sfmD at 4463.372 kb on - strand, within sfmD at 4463.382 kb on + strand, within sfmD at 4463.383 kb on - strand, within sfmD at 4463.659 kb on + strand, within sfmD at 4463.669 kb on - strand, within sfmD at 4463.676 kb on - strand, within sfmD at 4463.676 kb on - strand, within sfmD at 4463.762 kb on - strand, within sfmD at 4463.765 kb on + strand, within sfmD at 4463.765 kb on + strand, within sfmD at 4463.765 kb on + strand, within sfmD at 4463.765 kb on + strand, within sfmD at 4463.766 kb on - strand, within sfmD at 4463.766 kb on - strand, within sfmD at 4463.898 kb on - strand, within sfmD at 4463.978 kb on + strand, within sfmD at 4464.132 kb on - strand, within sfmD at 4464.340 kb on - strand, within sfmD at 4464.557 kb on - strand at 4464.626 kb on - strand at 4464.729 kb on - strand, within fimC at 4464.827 kb on - strand, within fimC at 4464.967 kb on - strand, within fimC at 4465.040 kb on + strand, within fimC at 4465.412 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 4,461,224 + fimH BNILDI_22205 0.26 -0.3 4,461,224 + fimH BNILDI_22205 0.26 +1.5 4,461,412 - fimH BNILDI_22205 0.44 -0.6 4,461,419 + fimH BNILDI_22205 0.45 +0.4 4,461,462 - fimH BNILDI_22205 0.49 +0.9 4,461,661 + fimH BNILDI_22205 0.69 -3.1 4,461,906 + -0.6 4,461,977 - -0.1 4,461,977 - +0.3 4,462,055 - +1.1 4,462,058 + -1.0 4,462,058 + +0.9 4,462,059 - +1.2 4,462,132 + -0.5 4,462,137 - +0.5 4,462,161 - +0.8 4,462,161 - +1.3 4,462,343 + -0.2 4,462,343 + +0.0 4,462,447 - sfmD BNILDI_22210 0.13 -0.1 4,462,576 + sfmD BNILDI_22210 0.18 +0.1 4,462,582 + sfmD BNILDI_22210 0.18 +0.1 4,462,604 - sfmD BNILDI_22210 0.19 -0.1 4,462,638 - sfmD BNILDI_22210 0.21 -0.2 4,462,638 - sfmD BNILDI_22210 0.21 -0.2 4,462,638 - sfmD BNILDI_22210 0.21 +0.7 4,462,639 + sfmD BNILDI_22210 0.21 -1.0 4,462,640 - sfmD BNILDI_22210 0.21 +2.1 4,462,655 + sfmD BNILDI_22210 0.21 -1.5 4,462,656 - sfmD BNILDI_22210 0.21 +0.3 4,462,711 - sfmD BNILDI_22210 0.24 +0.7 4,462,727 + sfmD BNILDI_22210 0.24 +0.0 4,462,768 + sfmD BNILDI_22210 0.26 -0.5 4,462,769 - sfmD BNILDI_22210 0.26 +0.3 4,462,839 - sfmD BNILDI_22210 0.29 -1.7 4,462,839 - sfmD BNILDI_22210 0.29 -0.0 4,462,851 - sfmD BNILDI_22210 0.29 +0.3 4,462,904 - sfmD BNILDI_22210 0.31 +0.3 4,462,904 - sfmD BNILDI_22210 0.31 +0.6 4,462,942 + sfmD BNILDI_22210 0.33 -2.6 4,462,965 - sfmD BNILDI_22210 0.34 +0.3 4,462,995 - sfmD BNILDI_22210 0.35 +0.1 4,462,995 - sfmD BNILDI_22210 0.35 +0.8 4,462,996 + sfmD BNILDI_22210 0.35 +1.7 4,462,997 - sfmD BNILDI_22210 0.35 -0.0 4,463,114 - sfmD BNILDI_22210 0.40 -0.8 4,463,125 + sfmD BNILDI_22210 0.40 -0.8 4,463,125 + sfmD BNILDI_22210 0.40 -0.6 4,463,171 - sfmD BNILDI_22210 0.42 -0.6 4,463,242 + sfmD BNILDI_22210 0.45 +0.6 4,463,287 - sfmD BNILDI_22210 0.47 +0.5 4,463,371 + sfmD BNILDI_22210 0.50 -1.1 4,463,372 - sfmD BNILDI_22210 0.50 -0.2 4,463,382 + sfmD BNILDI_22210 0.51 -0.9 4,463,383 - sfmD BNILDI_22210 0.51 -0.8 4,463,659 + sfmD BNILDI_22210 0.62 +0.4 4,463,669 - sfmD BNILDI_22210 0.62 +0.5 4,463,676 - sfmD BNILDI_22210 0.63 -1.8 4,463,676 - sfmD BNILDI_22210 0.63 -0.2 4,463,762 - sfmD BNILDI_22210 0.66 -0.7 4,463,765 + sfmD BNILDI_22210 0.66 -0.0 4,463,765 + sfmD BNILDI_22210 0.66 -0.4 4,463,765 + sfmD BNILDI_22210 0.66 +0.6 4,463,765 + sfmD BNILDI_22210 0.66 -3.0 4,463,766 - sfmD BNILDI_22210 0.66 -1.0 4,463,766 - sfmD BNILDI_22210 0.66 +0.1 4,463,898 - sfmD BNILDI_22210 0.72 +0.9 4,463,978 + sfmD BNILDI_22210 0.75 -0.1 4,464,132 - sfmD BNILDI_22210 0.81 -1.2 4,464,340 - sfmD BNILDI_22210 0.90 -0.3 4,464,557 - +0.7 4,464,626 - +0.6 4,464,729 - fimC BNILDI_22215 0.15 +0.4 4,464,827 - fimC BNILDI_22215 0.29 -0.4 4,464,967 - fimC BNILDI_22215 0.49 -0.0 4,465,040 + fimC BNILDI_22215 0.60 +2.1 4,465,412 - +1.3
Or see this region's nucleotide sequence