Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt entH and entA are separated by 2 nucleotides entA and entB overlap by 1 nucleotides entB and entE are separated by 13 nucleotides
BNILDI_21940: entH - proofreading thioesterase EntH, at 4,410,075 to 4,410,488
entH
BNILDI_21945: entA - 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase EntA, at 4,410,491 to 4,411,237
entA
BNILDI_21950: entB - enterobactin biosynthesis bifunctional isochorismatase/aryl carrier protein EntB, at 4,411,237 to 4,412,094
entB
BNILDI_21955: entE - (2,3-dihydroxybenzoyl)adenylate synthase EntE, at 4,412,108 to 4,413,718
entE
Position (kb) 4411
4412
4413 Strain fitness (log2 ratio) -2
-1
0
1 at 4410.275 kb on + strand, within entH at 4410.405 kb on - strand, within entH at 4410.406 kb on + strand, within entH at 4410.492 kb on + strand at 4410.493 kb on - strand at 4410.493 kb on - strand at 4410.629 kb on - strand, within entA at 4410.629 kb on - strand, within entA at 4410.730 kb on + strand, within entA at 4410.962 kb on - strand, within entA at 4411.037 kb on + strand, within entA at 4411.052 kb on + strand, within entA at 4411.053 kb on - strand, within entA at 4411.222 kb on + strand at 4411.259 kb on - strand at 4411.259 kb on - strand at 4411.374 kb on - strand, within entB at 4411.520 kb on + strand, within entB at 4411.588 kb on - strand, within entB at 4411.588 kb on - strand, within entB at 4411.599 kb on + strand, within entB at 4411.599 kb on + strand, within entB at 4411.623 kb on + strand, within entB at 4411.623 kb on + strand, within entB at 4411.640 kb on + strand, within entB at 4411.641 kb on - strand, within entB at 4411.653 kb on + strand, within entB at 4411.666 kb on - strand, within entB at 4411.815 kb on + strand, within entB at 4411.815 kb on + strand, within entB at 4411.815 kb on + strand, within entB at 4411.917 kb on + strand, within entB at 4412.034 kb on + strand at 4412.069 kb on + strand at 4412.280 kb on - strand, within entE at 4412.344 kb on - strand, within entE at 4412.344 kb on - strand, within entE at 4412.449 kb on - strand, within entE at 4412.680 kb on + strand, within entE at 4412.697 kb on + strand, within entE at 4412.698 kb on - strand, within entE at 4412.805 kb on - strand, within entE at 4412.805 kb on - strand, within entE at 4413.012 kb on + strand, within entE at 4413.012 kb on + strand, within entE at 4413.012 kb on + strand, within entE at 4413.012 kb on + strand, within entE at 4413.079 kb on + strand, within entE at 4413.093 kb on + strand, within entE at 4413.094 kb on - strand, within entE
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 4,410,275 + entH BNILDI_21940 0.48 -0.9 4,410,405 - entH BNILDI_21940 0.80 -0.1 4,410,406 + entH BNILDI_21940 0.80 +0.7 4,410,492 + +0.7 4,410,493 - -0.8 4,410,493 - +1.4 4,410,629 - entA BNILDI_21945 0.18 -1.5 4,410,629 - entA BNILDI_21945 0.18 -0.1 4,410,730 + entA BNILDI_21945 0.32 +0.5 4,410,962 - entA BNILDI_21945 0.63 +0.0 4,411,037 + entA BNILDI_21945 0.73 +0.6 4,411,052 + entA BNILDI_21945 0.75 +0.8 4,411,053 - entA BNILDI_21945 0.75 -2.3 4,411,222 + +1.6 4,411,259 - +0.2 4,411,259 - -0.8 4,411,374 - entB BNILDI_21950 0.16 +0.0 4,411,520 + entB BNILDI_21950 0.33 +1.6 4,411,588 - entB BNILDI_21950 0.41 +0.5 4,411,588 - entB BNILDI_21950 0.41 +0.2 4,411,599 + entB BNILDI_21950 0.42 -1.0 4,411,599 + entB BNILDI_21950 0.42 -0.9 4,411,623 + entB BNILDI_21950 0.45 +0.7 4,411,623 + entB BNILDI_21950 0.45 +0.1 4,411,640 + entB BNILDI_21950 0.47 +1.3 4,411,641 - entB BNILDI_21950 0.47 -0.2 4,411,653 + entB BNILDI_21950 0.48 +0.3 4,411,666 - entB BNILDI_21950 0.50 +0.7 4,411,815 + entB BNILDI_21950 0.67 +0.2 4,411,815 + entB BNILDI_21950 0.67 -0.6 4,411,815 + entB BNILDI_21950 0.67 -0.4 4,411,917 + entB BNILDI_21950 0.79 +1.2 4,412,034 + +0.4 4,412,069 + -1.0 4,412,280 - entE BNILDI_21955 0.11 +0.0 4,412,344 - entE BNILDI_21955 0.15 -1.2 4,412,344 - entE BNILDI_21955 0.15 +0.6 4,412,449 - entE BNILDI_21955 0.21 -1.0 4,412,680 + entE BNILDI_21955 0.36 -0.4 4,412,697 + entE BNILDI_21955 0.37 -1.4 4,412,698 - entE BNILDI_21955 0.37 +0.8 4,412,805 - entE BNILDI_21955 0.43 -0.3 4,412,805 - entE BNILDI_21955 0.43 +1.3 4,413,012 + entE BNILDI_21955 0.56 +0.5 4,413,012 + entE BNILDI_21955 0.56 +0.3 4,413,012 + entE BNILDI_21955 0.56 -0.6 4,413,012 + entE BNILDI_21955 0.56 +0.3 4,413,079 + entE BNILDI_21955 0.60 +0.9 4,413,093 + entE BNILDI_21955 0.61 +0.1 4,413,094 - entE BNILDI_21955 0.61 -0.3
Or see this region's nucleotide sequence