Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BNILDI_21835 and citE overlap by 4 nucleotides citE and citF are separated by 10 nucleotides citF and citX are separated by 3 nucleotides citX and citG overlap by 26 nucleotides
BNILDI_21835: BNILDI_21835 - citrate lyase acyl carrier protein 1, at 4,389,122 to 4,389,418
_21835
BNILDI_21840: citE - citrate (pro-3S)-lyase subunit beta, at 4,389,415 to 4,390,323
citE
BNILDI_21845: citF - citrate lyase subunit alpha, at 4,390,334 to 4,391,866
citF
BNILDI_21850: citX - Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase, at 4,391,870 to 4,392,421
citX
BNILDI_21855: citG - triphosphoribosyl-dephospho-CoA synthase CitG, at 4,392,396 to 4,393,274
citG
Position (kb) 4390
4391
4392 Strain fitness (log2 ratio) -1
0
1
2 at 4389.346 kb on - strand, within BNILDI_21835 at 4389.442 kb on - strand at 4389.514 kb on + strand, within citE at 4389.514 kb on + strand, within citE at 4389.515 kb on - strand, within citE at 4389.561 kb on - strand, within citE at 4389.593 kb on - strand, within citE at 4389.914 kb on - strand, within citE at 4389.931 kb on - strand, within citE at 4390.440 kb on - strand at 4390.509 kb on + strand, within citF at 4390.571 kb on - strand, within citF at 4390.657 kb on - strand, within citF at 4390.692 kb on - strand, within citF at 4390.792 kb on - strand, within citF at 4391.008 kb on - strand, within citF at 4391.133 kb on - strand, within citF at 4391.252 kb on - strand, within citF at 4391.310 kb on + strand, within citF at 4391.310 kb on + strand, within citF at 4391.311 kb on - strand, within citF at 4391.390 kb on - strand, within citF at 4391.500 kb on - strand, within citF at 4391.584 kb on + strand, within citF at 4391.585 kb on - strand, within citF at 4391.865 kb on - strand at 4392.209 kb on - strand, within citX at 4392.209 kb on - strand, within citX at 4392.209 kb on - strand, within citX at 4392.209 kb on - strand, within citX at 4392.366 kb on + strand at 4392.366 kb on + strand at 4392.419 kb on + strand at 4392.551 kb on + strand, within citG at 4392.629 kb on + strand, within citG at 4392.656 kb on - strand, within citG at 4392.681 kb on - strand, within citG at 4392.698 kb on + strand, within citG at 4392.699 kb on - strand, within citG at 4392.732 kb on - strand, within citG at 4392.732 kb on - strand, within citG at 4392.752 kb on - strand, within citG at 4392.825 kb on - strand, within citG
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 4,389,346 - BNILDI_21835 0.75 -0.2 4,389,442 - +0.9 4,389,514 + citE BNILDI_21840 0.11 -0.9 4,389,514 + citE BNILDI_21840 0.11 -0.7 4,389,515 - citE BNILDI_21840 0.11 +0.6 4,389,561 - citE BNILDI_21840 0.16 +0.6 4,389,593 - citE BNILDI_21840 0.20 +2.0 4,389,914 - citE BNILDI_21840 0.55 +0.6 4,389,931 - citE BNILDI_21840 0.57 +1.1 4,390,440 - +0.2 4,390,509 + citF BNILDI_21845 0.11 +0.2 4,390,571 - citF BNILDI_21845 0.15 +1.5 4,390,657 - citF BNILDI_21845 0.21 -0.1 4,390,692 - citF BNILDI_21845 0.23 +0.2 4,390,792 - citF BNILDI_21845 0.30 +1.0 4,391,008 - citF BNILDI_21845 0.44 +0.4 4,391,133 - citF BNILDI_21845 0.52 -1.0 4,391,252 - citF BNILDI_21845 0.60 +0.9 4,391,310 + citF BNILDI_21845 0.64 -0.4 4,391,310 + citF BNILDI_21845 0.64 +2.0 4,391,311 - citF BNILDI_21845 0.64 +0.0 4,391,390 - citF BNILDI_21845 0.69 -0.2 4,391,500 - citF BNILDI_21845 0.76 -0.6 4,391,584 + citF BNILDI_21845 0.82 -0.3 4,391,585 - citF BNILDI_21845 0.82 -0.1 4,391,865 - +0.4 4,392,209 - citX BNILDI_21850 0.61 -1.0 4,392,209 - citX BNILDI_21850 0.61 -0.5 4,392,209 - citX BNILDI_21850 0.61 -0.1 4,392,209 - citX BNILDI_21850 0.61 +0.0 4,392,366 + -0.2 4,392,366 + -0.5 4,392,419 + +1.3 4,392,551 + citG BNILDI_21855 0.18 -0.0 4,392,629 + citG BNILDI_21855 0.27 -0.6 4,392,656 - citG BNILDI_21855 0.30 +0.7 4,392,681 - citG BNILDI_21855 0.32 -0.6 4,392,698 + citG BNILDI_21855 0.34 +0.8 4,392,699 - citG BNILDI_21855 0.34 +0.4 4,392,732 - citG BNILDI_21855 0.38 -0.7 4,392,732 - citG BNILDI_21855 0.38 +0.9 4,392,752 - citG BNILDI_21855 0.41 -0.7 4,392,825 - citG BNILDI_21855 0.49 +0.2
Or see this region's nucleotide sequence