Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybeZ and ybeY overlap by 4 nucleotides ybeY and corC are separated by 89 nucleotides corC and lnt are separated by 24 nucleotides
BNILDI_21615: ybeZ - PhoH-like protein, at 4,345,672 to 4,346,751
ybeZ
BNILDI_21620: ybeY - rRNA maturation RNase YbeY, at 4,346,748 to 4,347,215
ybeY
BNILDI_21625: corC - CNNM family magnesium/cobalt transport protein CorC, at 4,347,305 to 4,348,183
corC
BNILDI_21630: lnt - apolipoprotein N-acyltransferase, at 4,348,208 to 4,349,746
lnt
Position (kb)
4347
4348
4349 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3 at 4346.308 kb on + strand, within ybeZ at 4346.392 kb on + strand, within ybeZ at 4346.392 kb on + strand, within ybeZ at 4346.392 kb on + strand, within ybeZ at 4346.392 kb on + strand, within ybeZ at 4346.392 kb on + strand, within ybeZ at 4346.392 kb on + strand, within ybeZ at 4346.392 kb on + strand, within ybeZ at 4346.424 kb on + strand, within ybeZ at 4346.550 kb on + strand, within ybeZ at 4346.561 kb on + strand, within ybeZ at 4346.561 kb on + strand, within ybeZ at 4346.561 kb on + strand, within ybeZ at 4346.561 kb on + strand, within ybeZ at 4346.608 kb on - strand, within ybeZ at 4347.195 kb on + strand at 4347.213 kb on + strand at 4347.213 kb on + strand at 4347.277 kb on + strand at 4347.281 kb on + strand at 4347.281 kb on + strand at 4347.281 kb on + strand at 4347.281 kb on + strand at 4347.282 kb on - strand at 4347.340 kb on - strand at 4347.463 kb on + strand, within corC at 4347.472 kb on + strand, within corC at 4347.721 kb on - strand, within corC at 4347.749 kb on - strand, within corC at 4347.749 kb on - strand, within corC at 4347.934 kb on + strand, within corC at 4348.205 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 4,346,308 + ybeZ BNILDI_21615 0.59 +1.0 4,346,392 + ybeZ BNILDI_21615 0.67 -0.3 4,346,392 + ybeZ BNILDI_21615 0.67 -0.0 4,346,392 + ybeZ BNILDI_21615 0.67 +0.4 4,346,392 + ybeZ BNILDI_21615 0.67 +0.0 4,346,392 + ybeZ BNILDI_21615 0.67 -1.2 4,346,392 + ybeZ BNILDI_21615 0.67 +0.4 4,346,392 + ybeZ BNILDI_21615 0.67 -0.9 4,346,424 + ybeZ BNILDI_21615 0.70 -1.1 4,346,550 + ybeZ BNILDI_21615 0.81 +3.2 4,346,561 + ybeZ BNILDI_21615 0.82 -0.1 4,346,561 + ybeZ BNILDI_21615 0.82 +1.8 4,346,561 + ybeZ BNILDI_21615 0.82 +0.1 4,346,561 + ybeZ BNILDI_21615 0.82 +0.1 4,346,608 - ybeZ BNILDI_21615 0.87 -0.6 4,347,195 + -3.5 4,347,213 + -0.0 4,347,213 + -0.8 4,347,277 + -0.0 4,347,281 + -0.0 4,347,281 + -0.1 4,347,281 + +0.1 4,347,281 + +0.2 4,347,282 - -4.9 4,347,340 - -3.7 4,347,463 + corC BNILDI_21625 0.18 +0.2 4,347,472 + corC BNILDI_21625 0.19 +0.2 4,347,721 - corC BNILDI_21625 0.47 -0.8 4,347,749 - corC BNILDI_21625 0.51 -1.8 4,347,749 - corC BNILDI_21625 0.51 -2.6 4,347,934 + corC BNILDI_21625 0.72 +0.0 4,348,205 + +0.8
Or see this region's nucleotide sequence