Strain Fitness in Escherichia coli ECRC62 around BNILDI_21625

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntybeZ and ybeY overlap by 4 nucleotidesybeY and corC are separated by 89 nucleotidescorC and lnt are separated by 24 nucleotides BNILDI_21615: ybeZ - PhoH-like protein, at 4,345,672 to 4,346,751 ybeZ BNILDI_21620: ybeY - rRNA maturation RNase YbeY, at 4,346,748 to 4,347,215 ybeY BNILDI_21625: corC - CNNM family magnesium/cobalt transport protein CorC, at 4,347,305 to 4,348,183 corC BNILDI_21630: lnt - apolipoprotein N-acyltransferase, at 4,348,208 to 4,349,746 lnt Position (kb) 4347 4348 4349Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 4346.308 kb on + strand, within ybeZat 4346.392 kb on + strand, within ybeZat 4346.392 kb on + strand, within ybeZat 4346.392 kb on + strand, within ybeZat 4346.392 kb on + strand, within ybeZat 4346.392 kb on + strand, within ybeZat 4346.392 kb on + strand, within ybeZat 4346.392 kb on + strand, within ybeZat 4346.424 kb on + strand, within ybeZat 4346.550 kb on + strand, within ybeZat 4346.561 kb on + strand, within ybeZat 4346.561 kb on + strand, within ybeZat 4346.561 kb on + strand, within ybeZat 4346.561 kb on + strand, within ybeZat 4346.608 kb on - strand, within ybeZat 4347.195 kb on + strandat 4347.213 kb on + strandat 4347.213 kb on + strandat 4347.277 kb on + strandat 4347.281 kb on + strandat 4347.281 kb on + strandat 4347.281 kb on + strandat 4347.281 kb on + strandat 4347.282 kb on - strandat 4347.340 kb on - strandat 4347.463 kb on + strand, within corCat 4347.472 kb on + strand, within corCat 4347.721 kb on - strand, within corCat 4347.749 kb on - strand, within corCat 4347.749 kb on - strand, within corCat 4347.934 kb on + strand, within corCat 4348.205 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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4,346,308 + ybeZ BNILDI_21615 0.59 +1.0
4,346,392 + ybeZ BNILDI_21615 0.67 -0.3
4,346,392 + ybeZ BNILDI_21615 0.67 -0.0
4,346,392 + ybeZ BNILDI_21615 0.67 +0.4
4,346,392 + ybeZ BNILDI_21615 0.67 +0.0
4,346,392 + ybeZ BNILDI_21615 0.67 -1.2
4,346,392 + ybeZ BNILDI_21615 0.67 +0.4
4,346,392 + ybeZ BNILDI_21615 0.67 -0.9
4,346,424 + ybeZ BNILDI_21615 0.70 -1.1
4,346,550 + ybeZ BNILDI_21615 0.81 +3.2
4,346,561 + ybeZ BNILDI_21615 0.82 -0.1
4,346,561 + ybeZ BNILDI_21615 0.82 +1.8
4,346,561 + ybeZ BNILDI_21615 0.82 +0.1
4,346,561 + ybeZ BNILDI_21615 0.82 +0.1
4,346,608 - ybeZ BNILDI_21615 0.87 -0.6
4,347,195 + -3.5
4,347,213 + -0.0
4,347,213 + -0.8
4,347,277 + -0.0
4,347,281 + -0.0
4,347,281 + -0.1
4,347,281 + +0.1
4,347,281 + +0.2
4,347,282 - -4.9
4,347,340 - -3.7
4,347,463 + corC BNILDI_21625 0.18 +0.2
4,347,472 + corC BNILDI_21625 0.19 +0.2
4,347,721 - corC BNILDI_21625 0.47 -0.8
4,347,749 - corC BNILDI_21625 0.51 -1.8
4,347,749 - corC BNILDI_21625 0.51 -2.6
4,347,934 + corC BNILDI_21625 0.72 +0.0
4,348,205 + +0.8

Or see this region's nucleotide sequence