Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BNILDI_20785 and ybiT are separated by 278 nucleotides ybiT and ldtB are separated by 218 nucleotides
BNILDI_20785: BNILDI_20785 - IS110-like element IS621 family transposase, at 4,185,669 to 4,186,649
_20785
BNILDI_20790: ybiT - ABC-F family ATPase, at 4,186,928 to 4,188,520
ybiT
BNILDI_20795: ldtB - L,D-transpeptidase, at 4,188,739 to 4,189,659
ldtB
Position (kb) 4186
4187
4188
4189 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4186.837 kb on + strand at 4186.837 kb on + strand at 4186.837 kb on + strand at 4186.837 kb on + strand at 4186.837 kb on + strand at 4186.942 kb on + strand at 4186.954 kb on - strand at 4186.963 kb on - strand at 4186.963 kb on - strand at 4187.027 kb on + strand at 4187.027 kb on + strand at 4187.070 kb on + strand at 4187.071 kb on - strand at 4187.344 kb on - strand, within ybiT at 4187.364 kb on + strand, within ybiT at 4187.802 kb on + strand, within ybiT at 4187.802 kb on + strand, within ybiT at 4187.802 kb on + strand, within ybiT at 4187.803 kb on - strand, within ybiT at 4187.803 kb on - strand, within ybiT at 4187.811 kb on + strand, within ybiT at 4188.157 kb on + strand, within ybiT at 4188.158 kb on - strand, within ybiT at 4188.179 kb on - strand, within ybiT at 4188.179 kb on - strand, within ybiT at 4188.213 kb on + strand, within ybiT at 4188.214 kb on - strand, within ybiT at 4188.253 kb on + strand, within ybiT at 4188.254 kb on - strand, within ybiT at 4188.558 kb on + strand at 4188.559 kb on - strand at 4188.559 kb on - strand at 4188.559 kb on - strand at 4188.672 kb on - strand at 4188.672 kb on - strand at 4188.674 kb on - strand at 4188.674 kb on - strand at 4188.687 kb on + strand at 4188.695 kb on + strand at 4188.882 kb on + strand, within ldtB at 4188.882 kb on + strand, within ldtB at 4188.883 kb on - strand, within ldtB at 4188.883 kb on - strand, within ldtB at 4188.901 kb on + strand, within ldtB at 4188.989 kb on + strand, within ldtB at 4188.989 kb on + strand, within ldtB at 4188.990 kb on - strand, within ldtB at 4188.990 kb on - strand, within ldtB at 4189.048 kb on - strand, within ldtB at 4189.048 kb on - strand, within ldtB at 4189.069 kb on + strand, within ldtB at 4189.073 kb on - strand, within ldtB at 4189.073 kb on - strand, within ldtB at 4189.128 kb on - strand, within ldtB at 4189.138 kb on - strand, within ldtB at 4189.138 kb on - strand, within ldtB at 4189.171 kb on - strand, within ldtB at 4189.286 kb on - strand, within ldtB at 4189.295 kb on - strand, within ldtB at 4189.309 kb on + strand, within ldtB at 4189.309 kb on + strand, within ldtB at 4189.309 kb on + strand, within ldtB at 4189.355 kb on + strand, within ldtB at 4189.356 kb on - strand, within ldtB at 4189.438 kb on - strand, within ldtB at 4189.486 kb on - strand, within ldtB at 4189.486 kb on - strand, within ldtB at 4189.486 kb on - strand, within ldtB at 4189.486 kb on - strand, within ldtB
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 4,186,837 + -0.6 4,186,837 + +0.5 4,186,837 + +0.7 4,186,837 + +0.6 4,186,837 + +0.4 4,186,942 + -0.1 4,186,954 - -1.0 4,186,963 - +0.6 4,186,963 - +0.1 4,187,027 + -1.3 4,187,027 + -1.1 4,187,070 + +0.8 4,187,071 - -0.6 4,187,344 - ybiT BNILDI_20790 0.26 -0.8 4,187,364 + ybiT BNILDI_20790 0.27 +0.3 4,187,802 + ybiT BNILDI_20790 0.55 +0.7 4,187,802 + ybiT BNILDI_20790 0.55 +0.4 4,187,802 + ybiT BNILDI_20790 0.55 +1.0 4,187,803 - ybiT BNILDI_20790 0.55 +0.5 4,187,803 - ybiT BNILDI_20790 0.55 +0.2 4,187,811 + ybiT BNILDI_20790 0.55 +0.4 4,188,157 + ybiT BNILDI_20790 0.77 -1.2 4,188,158 - ybiT BNILDI_20790 0.77 -0.6 4,188,179 - ybiT BNILDI_20790 0.79 +0.5 4,188,179 - ybiT BNILDI_20790 0.79 +0.3 4,188,213 + ybiT BNILDI_20790 0.81 +0.8 4,188,214 - ybiT BNILDI_20790 0.81 -0.0 4,188,253 + ybiT BNILDI_20790 0.83 -0.4 4,188,254 - ybiT BNILDI_20790 0.83 -0.2 4,188,558 + -0.0 4,188,559 - +0.4 4,188,559 - +0.8 4,188,559 - +0.2 4,188,672 - -1.9 4,188,672 - +2.6 4,188,674 - +0.3 4,188,674 - -0.4 4,188,687 + -0.2 4,188,695 + +0.2 4,188,882 + ldtB BNILDI_20795 0.16 +0.5 4,188,882 + ldtB BNILDI_20795 0.16 -0.5 4,188,883 - ldtB BNILDI_20795 0.16 +0.0 4,188,883 - ldtB BNILDI_20795 0.16 +0.5 4,188,901 + ldtB BNILDI_20795 0.18 +0.5 4,188,989 + ldtB BNILDI_20795 0.27 +1.2 4,188,989 + ldtB BNILDI_20795 0.27 -4.2 4,188,990 - ldtB BNILDI_20795 0.27 +1.4 4,188,990 - ldtB BNILDI_20795 0.27 -1.8 4,189,048 - ldtB BNILDI_20795 0.34 +1.0 4,189,048 - ldtB BNILDI_20795 0.34 -0.2 4,189,069 + ldtB BNILDI_20795 0.36 +0.9 4,189,073 - ldtB BNILDI_20795 0.36 +0.7 4,189,073 - ldtB BNILDI_20795 0.36 +0.7 4,189,128 - ldtB BNILDI_20795 0.42 +0.3 4,189,138 - ldtB BNILDI_20795 0.43 -0.2 4,189,138 - ldtB BNILDI_20795 0.43 +0.4 4,189,171 - ldtB BNILDI_20795 0.47 -0.7 4,189,286 - ldtB BNILDI_20795 0.59 -0.0 4,189,295 - ldtB BNILDI_20795 0.60 -1.1 4,189,309 + ldtB BNILDI_20795 0.62 -0.0 4,189,309 + ldtB BNILDI_20795 0.62 +0.3 4,189,309 + ldtB BNILDI_20795 0.62 +0.1 4,189,355 + ldtB BNILDI_20795 0.67 -0.0 4,189,356 - ldtB BNILDI_20795 0.67 +0.2 4,189,438 - ldtB BNILDI_20795 0.76 +0.8 4,189,486 - ldtB BNILDI_20795 0.81 +0.6 4,189,486 - ldtB BNILDI_20795 0.81 -0.7 4,189,486 - ldtB BNILDI_20795 0.81 -0.9 4,189,486 - ldtB BNILDI_20795 0.81 +0.1
Or see this region's nucleotide sequence