Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybiV and ybiU are separated by 151 nucleotides ybiU and BNILDI_20785 are separated by 260 nucleotides
BNILDI_20775: ybiV - sugar-phosphatase YbiV, at 4,183,176 to 4,183,991
ybiV
BNILDI_20780: ybiU - Uncharacterized protein YbiU, at 4,184,143 to 4,185,408
ybiU
BNILDI_20785: BNILDI_20785 - IS110-like element IS621 family transposase, at 4,185,669 to 4,186,649
_20785
Position (kb) 4184
4185
4186 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4183.175 kb on + strand at 4183.175 kb on + strand at 4183.175 kb on + strand at 4183.175 kb on + strand at 4183.175 kb on + strand at 4183.176 kb on - strand at 4183.176 kb on - strand at 4183.212 kb on - strand at 4183.512 kb on + strand, within ybiV at 4183.512 kb on + strand, within ybiV at 4183.513 kb on - strand, within ybiV at 4183.609 kb on + strand, within ybiV at 4183.609 kb on + strand, within ybiV at 4183.610 kb on - strand, within ybiV at 4183.610 kb on - strand, within ybiV at 4183.745 kb on - strand, within ybiV at 4183.925 kb on + strand at 4183.926 kb on - strand at 4183.983 kb on - strand at 4184.151 kb on + strand at 4184.259 kb on - strand at 4184.389 kb on - strand, within ybiU at 4184.411 kb on + strand, within ybiU at 4184.412 kb on - strand, within ybiU at 4184.412 kb on - strand, within ybiU at 4184.412 kb on - strand, within ybiU at 4184.498 kb on - strand, within ybiU at 4184.564 kb on - strand, within ybiU at 4184.564 kb on - strand, within ybiU at 4184.564 kb on - strand, within ybiU at 4184.818 kb on - strand, within ybiU at 4184.836 kb on + strand, within ybiU at 4185.001 kb on + strand, within ybiU at 4185.001 kb on + strand, within ybiU at 4185.002 kb on - strand, within ybiU at 4185.002 kb on - strand, within ybiU at 4185.005 kb on + strand, within ybiU at 4185.005 kb on + strand, within ybiU at 4185.006 kb on - strand, within ybiU at 4185.006 kb on - strand, within ybiU at 4185.012 kb on - strand, within ybiU at 4185.104 kb on + strand, within ybiU at 4185.223 kb on + strand, within ybiU at 4185.224 kb on - strand, within ybiU at 4185.354 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 4,183,175 + +0.6 4,183,175 + -0.3 4,183,175 + -1.7 4,183,175 + -0.7 4,183,175 + -0.1 4,183,176 - +0.3 4,183,176 - +0.6 4,183,212 - +1.4 4,183,512 + ybiV BNILDI_20775 0.41 +0.9 4,183,512 + ybiV BNILDI_20775 0.41 +0.8 4,183,513 - ybiV BNILDI_20775 0.41 +0.1 4,183,609 + ybiV BNILDI_20775 0.53 +1.4 4,183,609 + ybiV BNILDI_20775 0.53 +0.5 4,183,610 - ybiV BNILDI_20775 0.53 -0.3 4,183,610 - ybiV BNILDI_20775 0.53 -1.2 4,183,745 - ybiV BNILDI_20775 0.70 +1.9 4,183,925 + -1.8 4,183,926 - -0.4 4,183,983 - +1.1 4,184,151 + -0.7 4,184,259 - +0.5 4,184,389 - ybiU BNILDI_20780 0.19 -2.3 4,184,411 + ybiU BNILDI_20780 0.21 -0.3 4,184,412 - ybiU BNILDI_20780 0.21 +0.2 4,184,412 - ybiU BNILDI_20780 0.21 +0.2 4,184,412 - ybiU BNILDI_20780 0.21 -0.5 4,184,498 - ybiU BNILDI_20780 0.28 -0.4 4,184,564 - ybiU BNILDI_20780 0.33 -2.5 4,184,564 - ybiU BNILDI_20780 0.33 -0.3 4,184,564 - ybiU BNILDI_20780 0.33 -0.3 4,184,818 - ybiU BNILDI_20780 0.53 +0.4 4,184,836 + ybiU BNILDI_20780 0.55 -0.5 4,185,001 + ybiU BNILDI_20780 0.68 -1.8 4,185,001 + ybiU BNILDI_20780 0.68 +0.3 4,185,002 - ybiU BNILDI_20780 0.68 -2.0 4,185,002 - ybiU BNILDI_20780 0.68 +0.1 4,185,005 + ybiU BNILDI_20780 0.68 -0.2 4,185,005 + ybiU BNILDI_20780 0.68 -1.8 4,185,006 - ybiU BNILDI_20780 0.68 -0.8 4,185,006 - ybiU BNILDI_20780 0.68 -0.2 4,185,012 - ybiU BNILDI_20780 0.69 -0.3 4,185,104 + ybiU BNILDI_20780 0.76 -1.3 4,185,223 + ybiU BNILDI_20780 0.85 +0.3 4,185,224 - ybiU BNILDI_20780 0.85 -0.6 4,185,354 + +1.4
Or see this region's nucleotide sequence