Strain Fitness in Escherichia coli ECRC62 around BNILDI_20715

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBNILDI_20705 and BNILDI_20715 are separated by 69 nucleotidesBNILDI_20715 and gsiD are separated by 177 nucleotides BNILDI_20705: BNILDI_20705 - IS4-like element ISVsa5 family transposase, at 4,167,570 to 4,168,778 _20705 BNILDI_20715: BNILDI_20715 - CHASE9 sensor domain-containing protein, at 4,168,848 to 4,170,122 _20715 BNILDI_20720: gsiD - glutathione ABC transporter permease GsiD, at 4,170,300 to 4,171,211 gsiD Position (kb) 4168 4169 4170 4171Strain fitness (log2 ratio) -2 -1 0 1at 4168.945 kb on + strandat 4169.159 kb on + strand, within BNILDI_20715at 4169.591 kb on + strand, within BNILDI_20715at 4169.654 kb on + strand, within BNILDI_20715at 4169.746 kb on - strand, within BNILDI_20715at 4170.510 kb on - strand, within gsiDat 4170.548 kb on + strand, within gsiDat 4170.572 kb on + strand, within gsiDat 4170.573 kb on - strand, within gsiDat 4170.582 kb on + strand, within gsiDat 4170.582 kb on + strand, within gsiDat 4170.627 kb on - strand, within gsiDat 4170.707 kb on + strand, within gsiDat 4171.001 kb on - strand, within gsiD

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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4,168,945 + -0.7
4,169,159 + BNILDI_20715 0.24 +1.5
4,169,591 + BNILDI_20715 0.58 +0.4
4,169,654 + BNILDI_20715 0.63 +0.9
4,169,746 - BNILDI_20715 0.70 +0.6
4,170,510 - gsiD BNILDI_20720 0.23 -1.8
4,170,548 + gsiD BNILDI_20720 0.27 +0.7
4,170,572 + gsiD BNILDI_20720 0.30 -0.5
4,170,573 - gsiD BNILDI_20720 0.30 -0.5
4,170,582 + gsiD BNILDI_20720 0.31 +1.0
4,170,582 + gsiD BNILDI_20720 0.31 +0.7
4,170,627 - gsiD BNILDI_20720 0.36 -1.5
4,170,707 + gsiD BNILDI_20720 0.45 -0.6
4,171,001 - gsiD BNILDI_20720 0.77 +0.6

Or see this region's nucleotide sequence