Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybjS and amiD overlap by 4 nucleotides amiD and ybjQ overlap by 4 nucleotides ybjQ and BNILDI_20525 are separated by 125 nucleotides BNILDI_20525 and artP are separated by 217 nucleotides
BNILDI_20510: ybjS - Uncharacterized protein YbjS, at 4,135,034 to 4,136,047
ybjS
BNILDI_20515: amiD - N-acetylmuramoyl-L-alanine amidase AmiD, at 4,136,044 to 4,136,874
amiD
BNILDI_20520: ybjQ - UPF0145 protein YbjQ, at 4,136,871 to 4,137,194
ybjQ
BNILDI_20525: BNILDI_20525 - lipoprotein, at 4,137,320 to 4,137,835
_20525
BNILDI_20530: artP - arginine ABC transporter ATP-binding protein ArtP, at 4,138,053 to 4,138,781
artP
Position (kb) 4136
4137
4138 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4135.930 kb on + strand, within ybjS at 4135.931 kb on - strand, within ybjS at 4135.940 kb on - strand, within ybjS at 4135.943 kb on - strand, within ybjS at 4135.962 kb on + strand at 4135.963 kb on - strand at 4135.963 kb on - strand at 4136.058 kb on - strand at 4136.113 kb on - strand at 4136.114 kb on + strand at 4136.114 kb on + strand at 4136.115 kb on - strand at 4136.116 kb on + strand at 4136.336 kb on - strand, within amiD at 4136.419 kb on - strand, within amiD at 4136.422 kb on - strand, within amiD at 4136.422 kb on - strand, within amiD at 4136.422 kb on - strand, within amiD at 4136.422 kb on - strand, within amiD at 4136.477 kb on + strand, within amiD at 4136.661 kb on - strand, within amiD at 4136.703 kb on + strand, within amiD at 4136.742 kb on + strand, within amiD at 4136.742 kb on + strand, within amiD at 4136.918 kb on + strand, within ybjQ at 4136.918 kb on + strand, within ybjQ at 4136.919 kb on - strand, within ybjQ at 4137.030 kb on - strand, within ybjQ at 4137.305 kb on + strand at 4137.306 kb on - strand at 4137.306 kb on - strand at 4137.397 kb on + strand, within BNILDI_20525 at 4137.397 kb on + strand, within BNILDI_20525 at 4137.465 kb on - strand, within BNILDI_20525 at 4137.673 kb on + strand, within BNILDI_20525 at 4137.673 kb on + strand, within BNILDI_20525 at 4137.673 kb on + strand, within BNILDI_20525 at 4137.673 kb on + strand, within BNILDI_20525 at 4137.768 kb on + strand, within BNILDI_20525 at 4137.769 kb on - strand, within BNILDI_20525 at 4137.769 kb on - strand, within BNILDI_20525 at 4137.898 kb on - strand at 4137.923 kb on - strand at 4137.933 kb on - strand at 4137.933 kb on - strand at 4138.008 kb on - strand at 4138.022 kb on + strand at 4138.023 kb on - strand at 4138.023 kb on - strand at 4138.023 kb on - strand at 4138.023 kb on - strand at 4138.023 kb on - strand at 4138.042 kb on + strand at 4138.077 kb on - strand at 4138.150 kb on + strand, within artP at 4138.173 kb on - strand, within artP
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 4,135,930 + ybjS BNILDI_20510 0.88 +0.7 4,135,931 - ybjS BNILDI_20510 0.88 -2.2 4,135,940 - ybjS BNILDI_20510 0.89 +0.3 4,135,943 - ybjS BNILDI_20510 0.90 -1.9 4,135,962 + +0.0 4,135,963 - +0.6 4,135,963 - -0.3 4,136,058 - -0.2 4,136,113 - +1.4 4,136,114 + +1.7 4,136,114 + -0.5 4,136,115 - +1.5 4,136,116 + -0.7 4,136,336 - amiD BNILDI_20515 0.35 +0.2 4,136,419 - amiD BNILDI_20515 0.45 +0.1 4,136,422 - amiD BNILDI_20515 0.45 +0.4 4,136,422 - amiD BNILDI_20515 0.45 +1.2 4,136,422 - amiD BNILDI_20515 0.45 -0.5 4,136,422 - amiD BNILDI_20515 0.45 -0.5 4,136,477 + amiD BNILDI_20515 0.52 -0.4 4,136,661 - amiD BNILDI_20515 0.74 -3.3 4,136,703 + amiD BNILDI_20515 0.79 -1.1 4,136,742 + amiD BNILDI_20515 0.84 -0.5 4,136,742 + amiD BNILDI_20515 0.84 +0.2 4,136,918 + ybjQ BNILDI_20520 0.15 +0.6 4,136,918 + ybjQ BNILDI_20520 0.15 +0.7 4,136,919 - ybjQ BNILDI_20520 0.15 +0.0 4,137,030 - ybjQ BNILDI_20520 0.49 -1.0 4,137,305 + -0.6 4,137,306 - -0.0 4,137,306 - +1.1 4,137,397 + BNILDI_20525 0.15 -0.3 4,137,397 + BNILDI_20525 0.15 -0.2 4,137,465 - BNILDI_20525 0.28 -0.1 4,137,673 + BNILDI_20525 0.68 -0.6 4,137,673 + BNILDI_20525 0.68 +0.2 4,137,673 + BNILDI_20525 0.68 -3.6 4,137,673 + BNILDI_20525 0.68 -0.2 4,137,768 + BNILDI_20525 0.87 -0.4 4,137,769 - BNILDI_20525 0.87 +1.9 4,137,769 - BNILDI_20525 0.87 -0.1 4,137,898 - +0.5 4,137,923 - -0.2 4,137,933 - -0.0 4,137,933 - -0.2 4,138,008 - -3.3 4,138,022 + +0.1 4,138,023 - -0.5 4,138,023 - -0.5 4,138,023 - -3.7 4,138,023 - -0.0 4,138,023 - +0.7 4,138,042 + -0.0 4,138,077 - -0.0 4,138,150 + artP BNILDI_20530 0.13 +0.5 4,138,173 - artP BNILDI_20530 0.16 +0.6
Or see this region's nucleotide sequence