Strain Fitness in Escherichia coli ECRC62 around BNILDI_20425

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntaat and infA are separated by 284 nucleotidesinfA and Ser_trna are separated by 252 nucleotidesSer_trna and clpA are separated by 343 nucleotides BNILDI_20420: aat - leucyl/phenylalanyl-tRNA--protein transferase, at 4,114,356 to 4,115,060 aat BNILDI_20425: infA - translation initiation factor IF-1, at 4,115,345 to 4,115,563 infA BNILDI_20430: Ser_trna - tRNA-Ser(gga), at 4,115,816 to 4,115,903 _trna BNILDI_20435: clpA - ATP-dependent Clp protease ATP-binding subunit ClpA, at 4,116,247 to 4,118,523 clpA Position (kb) 4115 4116Strain fitness (log2 ratio) -3 -2 -1 0 1at 4114.574 kb on + strand, within aatat 4114.586 kb on + strand, within aatat 4114.587 kb on - strand, within aatat 4114.587 kb on - strand, within aatat 4114.789 kb on - strand, within aatat 4114.854 kb on - strand, within aatat 4114.974 kb on + strand, within aatat 4114.975 kb on - strand, within aatat 4114.979 kb on + strand, within aatat 4114.979 kb on + strand, within aatat 4114.983 kb on + strand, within aatat 4114.984 kb on - strand, within aatat 4115.092 kb on - strandat 4115.094 kb on - strandat 4115.094 kb on - strandat 4115.189 kb on + strandat 4115.189 kb on + strandat 4115.189 kb on + strandat 4115.191 kb on + strandat 4115.191 kb on + strandat 4115.192 kb on - strandat 4115.192 kb on - strandat 4115.192 kb on - strandat 4115.641 kb on + strandat 4115.642 kb on - strandat 4115.642 kb on - strandat 4115.642 kb on - strandat 4115.660 kb on - strandat 4115.688 kb on + strandat 4115.688 kb on + strandat 4115.689 kb on - strandat 4115.689 kb on - strandat 4115.690 kb on + strandat 4115.690 kb on + strandat 4115.691 kb on - strandat 4115.691 kb on - strandat 4115.725 kb on - strandat 4115.729 kb on - strandat 4115.769 kb on - strandat 4115.993 kb on - strandat 4115.993 kb on - strandat 4116.040 kb on + strandat 4116.040 kb on + strandat 4116.043 kb on + strandat 4116.063 kb on - strandat 4116.066 kb on - strandat 4116.232 kb on + strandat 4116.534 kb on + strand, within clpA

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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4,114,574 + aat BNILDI_20420 0.31 -0.1
4,114,586 + aat BNILDI_20420 0.33 -1.2
4,114,587 - aat BNILDI_20420 0.33 -0.7
4,114,587 - aat BNILDI_20420 0.33 -0.2
4,114,789 - aat BNILDI_20420 0.61 -0.1
4,114,854 - aat BNILDI_20420 0.71 -1.8
4,114,974 + aat BNILDI_20420 0.88 +0.4
4,114,975 - aat BNILDI_20420 0.88 +0.7
4,114,979 + aat BNILDI_20420 0.88 -0.8
4,114,979 + aat BNILDI_20420 0.88 -0.9
4,114,983 + aat BNILDI_20420 0.89 +0.3
4,114,984 - aat BNILDI_20420 0.89 -1.1
4,115,092 - -0.1
4,115,094 - -0.0
4,115,094 - -0.3
4,115,189 + -1.0
4,115,189 + -2.3
4,115,189 + -3.2
4,115,191 + -0.8
4,115,191 + -0.6
4,115,192 - +0.8
4,115,192 - +1.0
4,115,192 - -0.4
4,115,641 + -0.4
4,115,642 - -0.4
4,115,642 - -0.3
4,115,642 - -0.4
4,115,660 - +0.3
4,115,688 + -0.4
4,115,688 + +0.2
4,115,689 - +0.5
4,115,689 - -1.2
4,115,690 + +0.1
4,115,690 + -1.6
4,115,691 - +0.1
4,115,691 - -1.1
4,115,725 - -0.1
4,115,729 - -0.6
4,115,769 - +0.3
4,115,993 - +1.6
4,115,993 - -0.5
4,116,040 + +0.6
4,116,040 + +1.7
4,116,043 + -0.0
4,116,063 - -1.0
4,116,066 - +1.2
4,116,232 + +0.4
4,116,534 + clpA BNILDI_20435 0.13 -1.1

Or see this region's nucleotide sequence