Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt aat and infA are separated by 284 nucleotides infA and Ser_trna are separated by 252 nucleotides Ser_trna and clpA are separated by 343 nucleotides
BNILDI_20420: aat - leucyl/phenylalanyl-tRNA--protein transferase, at 4,114,356 to 4,115,060
aat
BNILDI_20425: infA - translation initiation factor IF-1, at 4,115,345 to 4,115,563
infA
BNILDI_20430: Ser_trna - tRNA-Ser(gga), at 4,115,816 to 4,115,903
_trna
BNILDI_20435: clpA - ATP-dependent Clp protease ATP-binding subunit ClpA, at 4,116,247 to 4,118,523
clpA
Position (kb)
4115
4116 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4114.574 kb on + strand, within aat at 4114.586 kb on + strand, within aat at 4114.587 kb on - strand, within aat at 4114.587 kb on - strand, within aat at 4114.789 kb on - strand, within aat at 4114.854 kb on - strand, within aat at 4114.974 kb on + strand, within aat at 4114.975 kb on - strand, within aat at 4114.979 kb on + strand, within aat at 4114.979 kb on + strand, within aat at 4114.983 kb on + strand, within aat at 4114.984 kb on - strand, within aat at 4115.092 kb on - strand at 4115.094 kb on - strand at 4115.094 kb on - strand at 4115.189 kb on + strand at 4115.189 kb on + strand at 4115.189 kb on + strand at 4115.191 kb on + strand at 4115.191 kb on + strand at 4115.192 kb on - strand at 4115.192 kb on - strand at 4115.192 kb on - strand at 4115.641 kb on + strand at 4115.642 kb on - strand at 4115.642 kb on - strand at 4115.642 kb on - strand at 4115.660 kb on - strand at 4115.688 kb on + strand at 4115.688 kb on + strand at 4115.689 kb on - strand at 4115.689 kb on - strand at 4115.690 kb on + strand at 4115.690 kb on + strand at 4115.691 kb on - strand at 4115.691 kb on - strand at 4115.725 kb on - strand at 4115.729 kb on - strand at 4115.769 kb on - strand at 4115.993 kb on - strand at 4115.993 kb on - strand at 4116.040 kb on + strand at 4116.040 kb on + strand at 4116.043 kb on + strand at 4116.063 kb on - strand at 4116.066 kb on - strand at 4116.232 kb on + strand at 4116.534 kb on + strand, within clpA
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 4,114,574 + aat BNILDI_20420 0.31 -0.1 4,114,586 + aat BNILDI_20420 0.33 -1.2 4,114,587 - aat BNILDI_20420 0.33 -0.7 4,114,587 - aat BNILDI_20420 0.33 -0.2 4,114,789 - aat BNILDI_20420 0.61 -0.1 4,114,854 - aat BNILDI_20420 0.71 -1.8 4,114,974 + aat BNILDI_20420 0.88 +0.4 4,114,975 - aat BNILDI_20420 0.88 +0.7 4,114,979 + aat BNILDI_20420 0.88 -0.8 4,114,979 + aat BNILDI_20420 0.88 -0.9 4,114,983 + aat BNILDI_20420 0.89 +0.3 4,114,984 - aat BNILDI_20420 0.89 -1.1 4,115,092 - -0.1 4,115,094 - -0.0 4,115,094 - -0.3 4,115,189 + -1.0 4,115,189 + -2.3 4,115,189 + -3.2 4,115,191 + -0.8 4,115,191 + -0.6 4,115,192 - +0.8 4,115,192 - +1.0 4,115,192 - -0.4 4,115,641 + -0.4 4,115,642 - -0.4 4,115,642 - -0.3 4,115,642 - -0.4 4,115,660 - +0.3 4,115,688 + -0.4 4,115,688 + +0.2 4,115,689 - +0.5 4,115,689 - -1.2 4,115,690 + +0.1 4,115,690 + -1.6 4,115,691 - +0.1 4,115,691 - -1.1 4,115,725 - -0.1 4,115,729 - -0.6 4,115,769 - +0.3 4,115,993 - +1.6 4,115,993 - -0.5 4,116,040 + +0.6 4,116,040 + +1.7 4,116,043 + -0.0 4,116,063 - -1.0 4,116,066 - +1.2 4,116,232 + +0.4 4,116,534 + clpA BNILDI_20435 0.13 -1.1
Or see this region's nucleotide sequence