Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt efeB and BNILDI_19645 are separated by 5 nucleotides BNILDI_19645 and BNILDI_19650 are separated by 63 nucleotides BNILDI_19650 and efeU are separated by 57 nucleotides
BNILDI_19640: efeB - iron uptake transporter deferrochelatase/peroxidase subunit, at 3,940,631 to 3,941,902
efeB
BNILDI_19645: BNILDI_19645 - Iron uptake system component EfeO, at 3,941,908 to 3,942,369
_19645
BNILDI_19650: BNILDI_19650 - Iron uptake system component EfeO, at 3,942,433 to 3,943,035
_19650
BNILDI_19655: efeU - Ferrous iron permease EfeU, at 3,943,093 to 3,943,923
efeU
Position (kb)
3941
3942
3943 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3940.959 kb on + strand, within efeB at 3941.242 kb on + strand, within efeB at 3941.728 kb on + strand, within efeB at 3941.896 kb on - strand at 3941.909 kb on + strand at 3942.009 kb on - strand, within BNILDI_19645 at 3942.027 kb on + strand, within BNILDI_19645 at 3942.036 kb on - strand, within BNILDI_19645 at 3942.063 kb on + strand, within BNILDI_19645 at 3942.315 kb on + strand, within BNILDI_19645 at 3942.316 kb on - strand, within BNILDI_19645 at 3942.318 kb on - strand, within BNILDI_19645 at 3942.498 kb on - strand, within BNILDI_19650 at 3942.518 kb on + strand, within BNILDI_19650 at 3942.612 kb on - strand, within BNILDI_19650 at 3942.612 kb on - strand, within BNILDI_19650 at 3942.619 kb on - strand, within BNILDI_19650 at 3942.621 kb on - strand, within BNILDI_19650 at 3942.621 kb on - strand, within BNILDI_19650 at 3942.621 kb on - strand, within BNILDI_19650 at 3942.628 kb on - strand, within BNILDI_19650 at 3942.754 kb on + strand, within BNILDI_19650 at 3942.898 kb on - strand, within BNILDI_19650 at 3942.970 kb on - strand, within BNILDI_19650 at 3943.163 kb on + strand at 3943.163 kb on + strand at 3943.363 kb on - strand, within efeU
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 3,940,959 + efeB BNILDI_19640 0.26 -2.9 3,941,242 + efeB BNILDI_19640 0.48 -0.1 3,941,728 + efeB BNILDI_19640 0.86 +0.2 3,941,896 - +0.8 3,941,909 + +1.8 3,942,009 - BNILDI_19645 0.22 +0.7 3,942,027 + BNILDI_19645 0.26 -0.2 3,942,036 - BNILDI_19645 0.28 +0.6 3,942,063 + BNILDI_19645 0.34 +0.1 3,942,315 + BNILDI_19645 0.88 +1.3 3,942,316 - BNILDI_19645 0.88 +0.1 3,942,318 - BNILDI_19645 0.89 -0.2 3,942,498 - BNILDI_19650 0.11 -0.9 3,942,518 + BNILDI_19650 0.14 +0.2 3,942,612 - BNILDI_19650 0.30 -0.1 3,942,612 - BNILDI_19650 0.30 -0.7 3,942,619 - BNILDI_19650 0.31 -0.3 3,942,621 - BNILDI_19650 0.31 +0.4 3,942,621 - BNILDI_19650 0.31 -1.8 3,942,621 - BNILDI_19650 0.31 -0.8 3,942,628 - BNILDI_19650 0.32 +0.4 3,942,754 + BNILDI_19650 0.53 +0.8 3,942,898 - BNILDI_19650 0.77 +0.2 3,942,970 - BNILDI_19650 0.89 +0.4 3,943,163 + +0.4 3,943,163 + -2.3 3,943,363 - efeU BNILDI_19655 0.32 +0.3
Or see this region's nucleotide sequence