Strain Fitness in Escherichia coli ECRC62 around BNILDI_19645

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntefeB and BNILDI_19645 are separated by 5 nucleotidesBNILDI_19645 and BNILDI_19650 are separated by 63 nucleotidesBNILDI_19650 and efeU are separated by 57 nucleotides BNILDI_19640: efeB - iron uptake transporter deferrochelatase/peroxidase subunit, at 3,940,631 to 3,941,902 efeB BNILDI_19645: BNILDI_19645 - Iron uptake system component EfeO, at 3,941,908 to 3,942,369 _19645 BNILDI_19650: BNILDI_19650 - Iron uptake system component EfeO, at 3,942,433 to 3,943,035 _19650 BNILDI_19655: efeU - Ferrous iron permease EfeU, at 3,943,093 to 3,943,923 efeU Position (kb) 3941 3942 3943Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3940.959 kb on + strand, within efeBat 3941.242 kb on + strand, within efeBat 3941.728 kb on + strand, within efeBat 3941.896 kb on - strandat 3941.909 kb on + strandat 3942.009 kb on - strand, within BNILDI_19645at 3942.027 kb on + strand, within BNILDI_19645at 3942.036 kb on - strand, within BNILDI_19645at 3942.063 kb on + strand, within BNILDI_19645at 3942.315 kb on + strand, within BNILDI_19645at 3942.316 kb on - strand, within BNILDI_19645at 3942.318 kb on - strand, within BNILDI_19645at 3942.498 kb on - strand, within BNILDI_19650at 3942.518 kb on + strand, within BNILDI_19650at 3942.612 kb on - strand, within BNILDI_19650at 3942.612 kb on - strand, within BNILDI_19650at 3942.619 kb on - strand, within BNILDI_19650at 3942.621 kb on - strand, within BNILDI_19650at 3942.621 kb on - strand, within BNILDI_19650at 3942.621 kb on - strand, within BNILDI_19650at 3942.628 kb on - strand, within BNILDI_19650at 3942.754 kb on + strand, within BNILDI_19650at 3942.898 kb on - strand, within BNILDI_19650at 3942.970 kb on - strand, within BNILDI_19650at 3943.163 kb on + strandat 3943.163 kb on + strandat 3943.363 kb on - strand, within efeU

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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3,940,959 + efeB BNILDI_19640 0.26 -2.9
3,941,242 + efeB BNILDI_19640 0.48 -0.1
3,941,728 + efeB BNILDI_19640 0.86 +0.2
3,941,896 - +0.8
3,941,909 + +1.8
3,942,009 - BNILDI_19645 0.22 +0.7
3,942,027 + BNILDI_19645 0.26 -0.2
3,942,036 - BNILDI_19645 0.28 +0.6
3,942,063 + BNILDI_19645 0.34 +0.1
3,942,315 + BNILDI_19645 0.88 +1.3
3,942,316 - BNILDI_19645 0.88 +0.1
3,942,318 - BNILDI_19645 0.89 -0.2
3,942,498 - BNILDI_19650 0.11 -0.9
3,942,518 + BNILDI_19650 0.14 +0.2
3,942,612 - BNILDI_19650 0.30 -0.1
3,942,612 - BNILDI_19650 0.30 -0.7
3,942,619 - BNILDI_19650 0.31 -0.3
3,942,621 - BNILDI_19650 0.31 +0.4
3,942,621 - BNILDI_19650 0.31 -1.8
3,942,621 - BNILDI_19650 0.31 -0.8
3,942,628 - BNILDI_19650 0.32 +0.4
3,942,754 + BNILDI_19650 0.53 +0.8
3,942,898 - BNILDI_19650 0.77 +0.2
3,942,970 - BNILDI_19650 0.89 +0.4
3,943,163 + +0.4
3,943,163 + -2.3
3,943,363 - efeU BNILDI_19655 0.32 +0.3

Or see this region's nucleotide sequence