Strain Fitness in Escherichia coli ECRC62 around BNILDI_18810

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntychF and BNILDI_18810 are separated by 244 nucleotidesBNILDI_18810 and ycgV are separated by 344 nucleotides BNILDI_18805: ychF - redox-regulated ATPase YchF, at 3,781,429 to 3,782,520 ychF BNILDI_18810: BNILDI_18810 - Putative membrane protein, at 3,782,765 to 3,782,944 _18810 BNILDI_18815: ycgV - Uncharacterized protein YcgV, at 3,783,289 to 3,786,156 ycgV Position (kb) 3782 3783Strain fitness (log2 ratio) -2 -1 0 1 2at 3782.038 kb on + strand, within ychFat 3782.039 kb on - strand, within ychFat 3782.272 kb on + strand, within ychFat 3782.528 kb on - strandat 3782.727 kb on - strandat 3782.728 kb on + strandat 3782.729 kb on - strandat 3782.729 kb on - strandat 3782.900 kb on - strand, within BNILDI_18810at 3782.900 kb on - strand, within BNILDI_18810at 3782.965 kb on - strandat 3783.124 kb on - strandat 3783.255 kb on + strandat 3783.276 kb on - strandat 3783.279 kb on + strandat 3783.422 kb on + strandat 3783.457 kb on - strandat 3783.459 kb on + strandat 3783.665 kb on + strand, within ycgVat 3783.665 kb on + strand, within ycgVat 3783.665 kb on + strand, within ycgVat 3783.666 kb on - strand, within ycgVat 3783.704 kb on + strand, within ycgVat 3783.704 kb on + strand, within ycgVat 3783.717 kb on + strand, within ycgVat 3783.751 kb on - strand, within ycgVat 3783.751 kb on - strand, within ycgVat 3783.783 kb on + strand, within ycgVat 3783.831 kb on + strand, within ycgVat 3783.834 kb on - strand, within ycgVat 3783.834 kb on - strand, within ycgVat 3783.834 kb on - strand, within ycgVat 3783.906 kb on + strand, within ycgVat 3783.907 kb on - strand, within ycgVat 3783.907 kb on - strand, within ycgVat 3783.907 kb on - strand, within ycgVat 3783.916 kb on + strand, within ycgVat 3783.917 kb on - strand, within ycgVat 3783.917 kb on - strand, within ycgV

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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3,782,038 + ychF BNILDI_18805 0.56 -1.4
3,782,039 - ychF BNILDI_18805 0.56 -0.0
3,782,272 + ychF BNILDI_18805 0.77 -0.5
3,782,528 - +1.1
3,782,727 - +0.8
3,782,728 + +0.1
3,782,729 - +1.8
3,782,729 - +0.2
3,782,900 - BNILDI_18810 0.75 +0.7
3,782,900 - BNILDI_18810 0.75 +0.4
3,782,965 - -1.9
3,783,124 - +0.2
3,783,255 + +1.4
3,783,276 - +0.1
3,783,279 + -0.1
3,783,422 + +1.7
3,783,457 - -1.9
3,783,459 + +0.2
3,783,665 + ycgV BNILDI_18815 0.13 -2.4
3,783,665 + ycgV BNILDI_18815 0.13 -0.5
3,783,665 + ycgV BNILDI_18815 0.13 -0.3
3,783,666 - ycgV BNILDI_18815 0.13 +1.6
3,783,704 + ycgV BNILDI_18815 0.14 +0.4
3,783,704 + ycgV BNILDI_18815 0.14 -0.0
3,783,717 + ycgV BNILDI_18815 0.15 +0.6
3,783,751 - ycgV BNILDI_18815 0.16 +0.9
3,783,751 - ycgV BNILDI_18815 0.16 +0.9
3,783,783 + ycgV BNILDI_18815 0.17 -0.7
3,783,831 + ycgV BNILDI_18815 0.19 -0.5
3,783,834 - ycgV BNILDI_18815 0.19 -1.2
3,783,834 - ycgV BNILDI_18815 0.19 +0.2
3,783,834 - ycgV BNILDI_18815 0.19 -1.5
3,783,906 + ycgV BNILDI_18815 0.22 -2.1
3,783,907 - ycgV BNILDI_18815 0.22 -1.0
3,783,907 - ycgV BNILDI_18815 0.22 +1.6
3,783,907 - ycgV BNILDI_18815 0.22 +0.0
3,783,916 + ycgV BNILDI_18815 0.22 +0.3
3,783,917 - ycgV BNILDI_18815 0.22 -0.7
3,783,917 - ycgV BNILDI_18815 0.22 -0.2

Or see this region's nucleotide sequence