Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BNILDI_16430 and BNILDI_16435 are separated by 263 nucleotides BNILDI_16435 and ydiE are separated by 3 nucleotides ydiE and aroH are separated by 131 nucleotides
BNILDI_16430: BNILDI_16430 - Replication protein, at 3,288,531 to 3,291,113
_16430
BNILDI_16435: BNILDI_16435 - Uncharacterized conserved protein, at 3,291,377 to 3,291,718
_16435
BNILDI_16440: ydiE - Uncharacterized protein YdiE, at 3,291,722 to 3,291,913
ydiE
BNILDI_16445: aroH - 3-deoxy-7-phosphoheptulonate synthase AroH, at 3,292,045 to 3,293,091
aroH
Position (kb)
3291
3292 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3290.416 kb on - strand, within BNILDI_16430 at 3290.454 kb on + strand, within BNILDI_16430 at 3290.455 kb on - strand, within BNILDI_16430 at 3290.553 kb on + strand, within BNILDI_16430 at 3290.582 kb on - strand, within BNILDI_16430 at 3290.696 kb on - strand, within BNILDI_16430 at 3291.002 kb on - strand at 3291.002 kb on - strand at 3291.184 kb on - strand at 3291.262 kb on - strand at 3291.430 kb on + strand, within BNILDI_16435 at 3291.599 kb on - strand, within BNILDI_16435 at 3291.662 kb on + strand, within BNILDI_16435 at 3291.662 kb on + strand, within BNILDI_16435 at 3291.724 kb on - strand at 3291.768 kb on + strand, within ydiE at 3291.812 kb on + strand, within ydiE at 3291.813 kb on - strand, within ydiE at 3291.899 kb on - strand at 3291.904 kb on + strand at 3291.907 kb on - strand at 3291.920 kb on + strand at 3292.061 kb on - strand at 3292.243 kb on - strand, within aroH at 3292.288 kb on - strand, within aroH at 3292.322 kb on - strand, within aroH at 3292.373 kb on + strand, within aroH at 3292.398 kb on + strand, within aroH at 3292.399 kb on - strand, within aroH at 3292.401 kb on + strand, within aroH at 3292.402 kb on - strand, within aroH at 3292.402 kb on - strand, within aroH at 3292.402 kb on - strand, within aroH at 3292.434 kb on - strand, within aroH at 3292.434 kb on - strand, within aroH at 3292.639 kb on - strand, within aroH at 3292.696 kb on + strand, within aroH
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 3,290,416 - BNILDI_16430 0.73 -0.0 3,290,454 + BNILDI_16430 0.74 -0.0 3,290,455 - BNILDI_16430 0.74 -0.6 3,290,553 + BNILDI_16430 0.78 +0.8 3,290,582 - BNILDI_16430 0.79 +0.6 3,290,696 - BNILDI_16430 0.84 +0.4 3,291,002 - -0.4 3,291,002 - -0.2 3,291,184 - -2.7 3,291,262 - -0.2 3,291,430 + BNILDI_16435 0.15 +0.5 3,291,599 - BNILDI_16435 0.65 -1.1 3,291,662 + BNILDI_16435 0.83 +0.6 3,291,662 + BNILDI_16435 0.83 -0.3 3,291,724 - -0.2 3,291,768 + ydiE BNILDI_16440 0.24 -2.5 3,291,812 + ydiE BNILDI_16440 0.47 -0.0 3,291,813 - ydiE BNILDI_16440 0.47 +1.8 3,291,899 - +0.6 3,291,904 + +0.1 3,291,907 - -1.2 3,291,920 + +1.6 3,292,061 - -1.9 3,292,243 - aroH BNILDI_16445 0.19 +0.1 3,292,288 - aroH BNILDI_16445 0.23 +0.1 3,292,322 - aroH BNILDI_16445 0.26 -0.2 3,292,373 + aroH BNILDI_16445 0.31 -0.4 3,292,398 + aroH BNILDI_16445 0.34 +0.4 3,292,399 - aroH BNILDI_16445 0.34 -2.1 3,292,401 + aroH BNILDI_16445 0.34 +0.3 3,292,402 - aroH BNILDI_16445 0.34 +0.6 3,292,402 - aroH BNILDI_16445 0.34 +0.0 3,292,402 - aroH BNILDI_16445 0.34 +0.1 3,292,434 - aroH BNILDI_16445 0.37 +0.6 3,292,434 - aroH BNILDI_16445 0.37 +0.3 3,292,639 - aroH BNILDI_16445 0.57 -3.2 3,292,696 + aroH BNILDI_16445 0.62 -3.4
Or see this region's nucleotide sequence