Strain Fitness in Escherichia coli ECRC62 around BNILDI_13415

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntnuoG and nuoH overlap by 4 nucleotidesnuoH and nuoI are separated by 14 nucleotidesnuoI and nuoJ are separated by 11 nucleotidesnuoJ and nuoK overlap by 4 nucleotidesnuoK and nuoL overlap by 4 nucleotides BNILDI_13405: nuoG - NADH-quinone oxidoreductase subunit NuoG, at 2,684,900 to 2,687,626 nuoG BNILDI_13410: nuoH - NADH-quinone oxidoreductase subunit NuoH, at 2,687,623 to 2,688,600 nuoH BNILDI_13415: nuoI - NADH-quinone oxidoreductase subunit NuoI, at 2,688,615 to 2,689,157 nuoI BNILDI_13420: nuoJ - NADH-quinone oxidoreductase subunit J, at 2,689,169 to 2,689,723 nuoJ BNILDI_13425: nuoK - NADH-quinone oxidoreductase subunit NuoK, at 2,689,720 to 2,690,022 nuoK BNILDI_13430: nuoL - NADH-quinone oxidoreductase subunit L, at 2,690,019 to 2,691,860 nuoL Position (kb) 2688 2689 2690Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 2687.770 kb on - strand, within nuoHat 2687.895 kb on + strand, within nuoHat 2687.896 kb on - strand, within nuoHat 2688.346 kb on + strand, within nuoHat 2688.457 kb on - strand, within nuoHat 2688.513 kb on - strandat 2688.659 kb on + strandat 2688.730 kb on - strand, within nuoIat 2688.987 kb on + strand, within nuoIat 2689.184 kb on + strandat 2689.184 kb on + strandat 2689.184 kb on + strandat 2689.206 kb on + strandat 2689.206 kb on + strandat 2689.206 kb on + strandat 2689.207 kb on - strandat 2689.207 kb on - strandat 2689.234 kb on + strand, within nuoJat 2689.578 kb on - strand, within nuoJat 2689.581 kb on + strand, within nuoJat 2689.603 kb on + strand, within nuoJat 2689.604 kb on - strand, within nuoJat 2689.604 kb on - strand, within nuoJat 2689.809 kb on + strand, within nuoKat 2689.809 kb on + strand, within nuoKat 2689.810 kb on - strand, within nuoKat 2689.874 kb on - strand, within nuoKat 2689.904 kb on - strand, within nuoKat 2689.904 kb on - strand, within nuoKat 2689.904 kb on - strand, within nuoK

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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2,687,770 - nuoH BNILDI_13410 0.15 -2.4
2,687,895 + nuoH BNILDI_13410 0.28 -0.1
2,687,896 - nuoH BNILDI_13410 0.28 -0.6
2,688,346 + nuoH BNILDI_13410 0.74 +0.1
2,688,457 - nuoH BNILDI_13410 0.85 -0.6
2,688,513 - -1.6
2,688,659 + -1.7
2,688,730 - nuoI BNILDI_13415 0.21 -2.3
2,688,987 + nuoI BNILDI_13415 0.69 -1.6
2,689,184 + +0.2
2,689,184 + +0.1
2,689,184 + -1.6
2,689,206 + +1.4
2,689,206 + -0.9
2,689,206 + +0.7
2,689,207 - +5.5
2,689,207 - -0.2
2,689,234 + nuoJ BNILDI_13420 0.12 -0.9
2,689,578 - nuoJ BNILDI_13420 0.74 -0.4
2,689,581 + nuoJ BNILDI_13420 0.74 -1.6
2,689,603 + nuoJ BNILDI_13420 0.78 +1.9
2,689,604 - nuoJ BNILDI_13420 0.78 +0.8
2,689,604 - nuoJ BNILDI_13420 0.78 -1.2
2,689,809 + nuoK BNILDI_13425 0.29 -0.2
2,689,809 + nuoK BNILDI_13425 0.29 -0.2
2,689,810 - nuoK BNILDI_13425 0.30 -0.3
2,689,874 - nuoK BNILDI_13425 0.51 +1.0
2,689,904 - nuoK BNILDI_13425 0.61 -2.3
2,689,904 - nuoK BNILDI_13425 0.61 -0.8
2,689,904 - nuoK BNILDI_13425 0.61 +2.2

Or see this region's nucleotide sequence