Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nuoG and nuoH overlap by 4 nucleotides nuoH and nuoI are separated by 14 nucleotides nuoI and nuoJ are separated by 11 nucleotides nuoJ and nuoK overlap by 4 nucleotides nuoK and nuoL overlap by 4 nucleotides
BNILDI_13405: nuoG - NADH-quinone oxidoreductase subunit NuoG, at 2,684,900 to 2,687,626
nuoG
BNILDI_13410: nuoH - NADH-quinone oxidoreductase subunit NuoH, at 2,687,623 to 2,688,600
nuoH
BNILDI_13415: nuoI - NADH-quinone oxidoreductase subunit NuoI, at 2,688,615 to 2,689,157
nuoI
BNILDI_13420: nuoJ - NADH-quinone oxidoreductase subunit J, at 2,689,169 to 2,689,723
nuoJ
BNILDI_13425: nuoK - NADH-quinone oxidoreductase subunit NuoK, at 2,689,720 to 2,690,022
nuoK
BNILDI_13430: nuoL - NADH-quinone oxidoreductase subunit L, at 2,690,019 to 2,691,860
nuoL
Position (kb)
2688
2689
2690 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5 at 2687.770 kb on - strand, within nuoH at 2687.895 kb on + strand, within nuoH at 2687.896 kb on - strand, within nuoH at 2688.346 kb on + strand, within nuoH at 2688.457 kb on - strand, within nuoH at 2688.513 kb on - strand at 2688.659 kb on + strand at 2688.730 kb on - strand, within nuoI at 2688.987 kb on + strand, within nuoI at 2689.184 kb on + strand at 2689.184 kb on + strand at 2689.184 kb on + strand at 2689.206 kb on + strand at 2689.206 kb on + strand at 2689.206 kb on + strand at 2689.207 kb on - strand at 2689.207 kb on - strand at 2689.234 kb on + strand, within nuoJ at 2689.578 kb on - strand, within nuoJ at 2689.581 kb on + strand, within nuoJ at 2689.603 kb on + strand, within nuoJ at 2689.604 kb on - strand, within nuoJ at 2689.604 kb on - strand, within nuoJ at 2689.809 kb on + strand, within nuoK at 2689.809 kb on + strand, within nuoK at 2689.810 kb on - strand, within nuoK at 2689.874 kb on - strand, within nuoK at 2689.904 kb on - strand, within nuoK at 2689.904 kb on - strand, within nuoK at 2689.904 kb on - strand, within nuoK
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 2,687,770 - nuoH BNILDI_13410 0.15 -2.4 2,687,895 + nuoH BNILDI_13410 0.28 -0.1 2,687,896 - nuoH BNILDI_13410 0.28 -0.6 2,688,346 + nuoH BNILDI_13410 0.74 +0.1 2,688,457 - nuoH BNILDI_13410 0.85 -0.6 2,688,513 - -1.6 2,688,659 + -1.7 2,688,730 - nuoI BNILDI_13415 0.21 -2.3 2,688,987 + nuoI BNILDI_13415 0.69 -1.6 2,689,184 + +0.2 2,689,184 + +0.1 2,689,184 + -1.6 2,689,206 + +1.4 2,689,206 + -0.9 2,689,206 + +0.7 2,689,207 - +5.5 2,689,207 - -0.2 2,689,234 + nuoJ BNILDI_13420 0.12 -0.9 2,689,578 - nuoJ BNILDI_13420 0.74 -0.4 2,689,581 + nuoJ BNILDI_13420 0.74 -1.6 2,689,603 + nuoJ BNILDI_13420 0.78 +1.9 2,689,604 - nuoJ BNILDI_13420 0.78 +0.8 2,689,604 - nuoJ BNILDI_13420 0.78 -1.2 2,689,809 + nuoK BNILDI_13425 0.29 -0.2 2,689,809 + nuoK BNILDI_13425 0.29 -0.2 2,689,810 - nuoK BNILDI_13425 0.30 -0.3 2,689,874 - nuoK BNILDI_13425 0.51 +1.0 2,689,904 - nuoK BNILDI_13425 0.61 -2.3 2,689,904 - nuoK BNILDI_13425 0.61 -0.8 2,689,904 - nuoK BNILDI_13425 0.61 +2.2
Or see this region's nucleotide sequence