Strain Fitness in Escherichia coli ECRC62 around BNILDI_13240

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntaccD and folC are separated by 69 nucleotidesfolC and dedD overlap by 11 nucleotidesdedD and cvpA are separated by 258 nucleotides BNILDI_13235: accD - acetyl-CoA carboxylase, carboxyltransferase subunit beta, at 2,651,139 to 2,652,053 accD BNILDI_13240: folC - bifunctional tetrahydrofolate synthase/dihydrofolate synthase, at 2,652,123 to 2,653,391 folC BNILDI_13245: dedD - cell division protein DedD, at 2,653,381 to 2,654,043 dedD BNILDI_13250: cvpA - colicin V production protein, at 2,654,302 to 2,654,790 cvpA Position (kb) 2652 2653 2654Strain fitness (log2 ratio) -2 -1 0 1at 2653.389 kb on + strandat 2653.389 kb on + strandat 2653.389 kb on + strandat 2653.390 kb on - strandat 2653.445 kb on + strandat 2653.811 kb on - strand, within dedDat 2653.811 kb on - strand, within dedDat 2653.896 kb on + strand, within dedDat 2653.897 kb on - strand, within dedDat 2653.936 kb on - strand, within dedDat 2653.966 kb on - strand, within dedDat 2654.030 kb on - strandat 2654.032 kb on - strandat 2654.041 kb on + strandat 2654.078 kb on - strandat 2654.097 kb on - strandat 2654.104 kb on + strandat 2654.301 kb on + strandat 2654.301 kb on + strandat 2654.302 kb on - strandat 2654.302 kb on - strandat 2654.302 kb on - strandat 2654.324 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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2,653,389 + -0.2
2,653,389 + -0.1
2,653,389 + -0.7
2,653,390 - +0.2
2,653,445 + -0.8
2,653,811 - dedD BNILDI_13245 0.65 +0.2
2,653,811 - dedD BNILDI_13245 0.65 -0.6
2,653,896 + dedD BNILDI_13245 0.78 -0.5
2,653,897 - dedD BNILDI_13245 0.78 -0.1
2,653,936 - dedD BNILDI_13245 0.84 +0.6
2,653,966 - dedD BNILDI_13245 0.88 -0.1
2,654,030 - +0.4
2,654,032 - -0.9
2,654,041 + +0.3
2,654,078 - -0.6
2,654,097 - -0.8
2,654,104 + +0.2
2,654,301 + -0.0
2,654,301 + -0.3
2,654,302 - -1.3
2,654,302 - -2.3
2,654,302 - -0.4
2,654,324 + +0.0

Or see this region's nucleotide sequence