Strain Fitness in Escherichia coli ECRC62 around BNILDI_12190

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nthisS and yfgM are separated by 17 nucleotidesyfgM and bamB are separated by 10 nucleotidesbamB and der are separated by 117 nucleotides BNILDI_12180: hisS - histidine--tRNA ligase, at 2,444,509 to 2,445,783 hisS BNILDI_12185: yfgM - ancillary SecYEG translocon subunit YfgM, at 2,445,801 to 2,446,421 yfgM BNILDI_12190: bamB - outer membrane protein assembly factor BamB, at 2,446,432 to 2,447,610 bamB BNILDI_12195: der - ribosome biogenesis GTPase Der, at 2,447,728 to 2,449,200 der Position (kb) 2446 2447 2448Strain fitness (log2 ratio) -2 -1 0 1at 2445.810 kb on + strandat 2446.052 kb on + strand, within yfgMat 2446.112 kb on - strand, within yfgMat 2446.367 kb on + strandat 2446.406 kb on + strandat 2446.481 kb on + strandat 2446.482 kb on - strandat 2446.500 kb on + strandat 2446.578 kb on + strand, within bamBat 2446.648 kb on + strand, within bamBat 2446.673 kb on + strand, within bamBat 2446.798 kb on + strand, within bamBat 2446.943 kb on + strand, within bamBat 2446.943 kb on + strand, within bamBat 2446.986 kb on + strand, within bamBat 2447.125 kb on - strand, within bamBat 2447.220 kb on + strand, within bamBat 2447.428 kb on + strand, within bamBat 2447.428 kb on + strand, within bamBat 2447.428 kb on + strand, within bamBat 2447.598 kb on + strandat 2447.601 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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2,445,810 + +0.6
2,446,052 + yfgM BNILDI_12185 0.40 -0.7
2,446,112 - yfgM BNILDI_12185 0.50 +1.0
2,446,367 + -0.3
2,446,406 + +0.5
2,446,481 + +0.1
2,446,482 - -0.5
2,446,500 + +0.3
2,446,578 + bamB BNILDI_12190 0.12 -2.1
2,446,648 + bamB BNILDI_12190 0.18 +0.6
2,446,673 + bamB BNILDI_12190 0.20 -0.1
2,446,798 + bamB BNILDI_12190 0.31 +0.3
2,446,943 + bamB BNILDI_12190 0.43 +0.5
2,446,943 + bamB BNILDI_12190 0.43 -0.8
2,446,986 + bamB BNILDI_12190 0.47 +0.2
2,447,125 - bamB BNILDI_12190 0.59 -0.5
2,447,220 + bamB BNILDI_12190 0.67 +1.3
2,447,428 + bamB BNILDI_12190 0.84 +0.3
2,447,428 + bamB BNILDI_12190 0.84 -0.3
2,447,428 + bamB BNILDI_12190 0.84 -1.7
2,447,598 + -0.6
2,447,601 + +1.4

Or see this region's nucleotide sequence