Strain Fitness in Escherichia coli ECRC62 around BNILDI_11405

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBNILDI_11390 and BNILDI_11395 are separated by 14 nucleotidesBNILDI_11395 and BNILDI_11400 are separated by 96 nucleotidesBNILDI_11400 and BNILDI_11405 are separated by 50 nucleotidesBNILDI_11405 and BNILDI_11410 are separated by 515 nucleotides BNILDI_11390: BNILDI_11390 - DNA-binding protein, at 2,294,406 to 2,296,280 _11390 BNILDI_11395: BNILDI_11395 - hypothetical protein, at 2,296,295 to 2,296,681 _11395 BNILDI_11400: BNILDI_11400 - Putative transmembrane protein, at 2,296,778 to 2,297,206 _11400 BNILDI_11405: BNILDI_11405 - Cell wall-binding protein, at 2,297,257 to 2,297,571 _11405 BNILDI_11410: BNILDI_11410 - relaxase, at 2,298,087 to 2,299,307 _11410 Position (kb) 2297 2298Strain fitness (log2 ratio) -2 -1 0 1 2at 2296.263 kb on - strandat 2296.641 kb on + strand, within BNILDI_11395at 2296.712 kb on - strandat 2296.729 kb on - strandat 2297.204 kb on + strandat 2297.251 kb on - strandat 2297.405 kb on - strand, within BNILDI_11405at 2297.487 kb on - strand, within BNILDI_11405at 2297.707 kb on - strandat 2297.713 kb on + strandat 2297.847 kb on - strandat 2297.926 kb on - strandat 2297.931 kb on - strandat 2298.174 kb on - strandat 2298.178 kb on + strandat 2298.178 kb on + strandat 2298.461 kb on + strand, within BNILDI_11410at 2298.462 kb on - strand, within BNILDI_11410at 2298.468 kb on - strand, within BNILDI_11410at 2298.473 kb on + strand, within BNILDI_11410at 2298.492 kb on + strand, within BNILDI_11410at 2298.493 kb on - strand, within BNILDI_11410at 2298.513 kb on + strand, within BNILDI_11410at 2298.534 kb on - strand, within BNILDI_11410at 2298.534 kb on - strand, within BNILDI_11410at 2298.562 kb on + strand, within BNILDI_11410

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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2,296,263 - +1.2
2,296,641 + BNILDI_11395 0.89 -0.3
2,296,712 - +0.2
2,296,729 - +0.5
2,297,204 + +0.6
2,297,251 - +0.6
2,297,405 - BNILDI_11405 0.47 +1.3
2,297,487 - BNILDI_11405 0.73 -1.5
2,297,707 - +0.0
2,297,713 + -2.0
2,297,847 - -0.4
2,297,926 - -2.1
2,297,931 - +0.5
2,298,174 - -0.1
2,298,178 + +0.8
2,298,178 + +1.4
2,298,461 + BNILDI_11410 0.31 +0.6
2,298,462 - BNILDI_11410 0.31 -0.8
2,298,468 - BNILDI_11410 0.31 +1.9
2,298,473 + BNILDI_11410 0.32 -2.5
2,298,492 + BNILDI_11410 0.33 +0.0
2,298,493 - BNILDI_11410 0.33 -0.3
2,298,513 + BNILDI_11410 0.35 -1.4
2,298,534 - BNILDI_11410 0.37 -0.8
2,298,534 - BNILDI_11410 0.37 +0.4
2,298,562 + BNILDI_11410 0.39 -2.4

Or see this region's nucleotide sequence