Strain Fitness in Escherichia coli ECRC62 around BNILDI_09980

Experiment: L-Arabinose

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Arabinose
2,001,908	+	gcvT	BNILDI_09970	0.66	-0.1
2,001,909	-	gcvT	BNILDI_09970	0.67	+0.1
2,002,058	+	gcvT	BNILDI_09970	0.80	+0.2
2,002,125	-	gcvT	BNILDI_09970	0.86	+0.1
2,002,178	+				+0.3
2,002,308	+				-0.4
2,002,326	-				-0.0
2,002,352	-	gcvH	BNILDI_09975	0.14	+1.6
2,002,370	+	gcvH	BNILDI_09975	0.18	+1.2
2,002,371	-	gcvH	BNILDI_09975	0.19	-0.9
2,002,381	+	gcvH	BNILDI_09975	0.21	+0.4
2,002,382	-	gcvH	BNILDI_09975	0.22	+0.3
2,002,488	+	gcvH	BNILDI_09975	0.49	+0.8
2,002,508	+	gcvH	BNILDI_09975	0.54	+0.5
2,002,519	-	gcvH	BNILDI_09975	0.57	-0.5
2,002,661	+				+2.0
2,002,662	-				-0.2
2,002,675	-				-1.3
2,002,675	-				-0.3
2,002,675	-				-2.8
2,002,675	-				+0.9
2,003,056	-				-1.3
2,003,056	-				+2.0
2,003,130	+	gcvP	BNILDI_09980	0.11	+0.3
2,003,139	+	gcvP	BNILDI_09980	0.12	-0.3
2,003,464	+	gcvP	BNILDI_09980	0.23	+0.9
2,003,465	-	gcvP	BNILDI_09980	0.23	+0.1
2,003,490	+	gcvP	BNILDI_09980	0.24	+0.4
2,003,490	+	gcvP	BNILDI_09980	0.24	-2.2
2,003,504	+	gcvP	BNILDI_09980	0.24	+1.4
2,003,683	-	gcvP	BNILDI_09980	0.31	+0.0
2,003,777	+	gcvP	BNILDI_09980	0.34	+0.2
2,003,811	-	gcvP	BNILDI_09980	0.35	+0.5
2,003,821	+	gcvP	BNILDI_09980	0.35	+0.9
2,003,822	-	gcvP	BNILDI_09980	0.35	-1.0
2,003,964	+	gcvP	BNILDI_09980	0.40	+0.1
2,004,007	+	gcvP	BNILDI_09980	0.42	+1.2
2,004,242	+	gcvP	BNILDI_09980	0.50	+0.1
2,004,250	-	gcvP	BNILDI_09980	0.50	-1.1
2,004,276	+	gcvP	BNILDI_09980	0.51	-2.4
2,004,276	+	gcvP	BNILDI_09980	0.51	-0.2
2,004,276	+	gcvP	BNILDI_09980	0.51	+0.1
2,004,278	+	gcvP	BNILDI_09980	0.51	-3.5
2,004,503	+	gcvP	BNILDI_09980	0.59	+0.1
2,004,504	-	gcvP	BNILDI_09980	0.59	+0.1
2,004,626	+	gcvP	BNILDI_09980	0.63	-1.0
2,004,644	+	gcvP	BNILDI_09980	0.64	+0.2
2,004,644	+	gcvP	BNILDI_09980	0.64	-0.9
2,004,645	-	gcvP	BNILDI_09980	0.64	-2.4
2,004,750	-	gcvP	BNILDI_09980	0.68	+0.3
2,004,771	-	gcvP	BNILDI_09980	0.68	+0.1
2,004,783	+	gcvP	BNILDI_09980	0.69	-1.4
2,004,783	+	gcvP	BNILDI_09980	0.69	+0.1
2,004,783	+	gcvP	BNILDI_09980	0.69	+1.1
2,004,926	+	gcvP	BNILDI_09980	0.74	+1.1
2,005,017	-	gcvP	BNILDI_09980	0.77	-0.1
2,005,110	+	gcvP	BNILDI_09980	0.80	-0.2
2,005,111	-	gcvP	BNILDI_09980	0.80	+0.4
2,005,111	-	gcvP	BNILDI_09980	0.80	-1.1
2,005,111	-	gcvP	BNILDI_09980	0.80	-1.6
2,005,176	+	gcvP	BNILDI_09980	0.82	-1.0
2,005,176	+	gcvP	BNILDI_09980	0.82	-0.9
2,005,177	-	gcvP	BNILDI_09980	0.82	-0.4
2,005,177	-	gcvP	BNILDI_09980	0.82	+1.8
2,005,179	-	gcvP	BNILDI_09980	0.83	-0.3
2,005,179	-	gcvP	BNILDI_09980	0.83	-0.5
2,005,215	+	gcvP	BNILDI_09980	0.84	-0.9
2,005,216	-	gcvP	BNILDI_09980	0.84	+0.2
2,005,216	-	gcvP	BNILDI_09980	0.84	+0.3
2,005,250	+	gcvP	BNILDI_09980	0.85	-0.9
2,005,324	-	gcvP	BNILDI_09980	0.88	-2.2
2,005,487	+				+0.4
2,005,593	+				-1.5
2,005,672	-				-0.1
2,005,678	-				+0.2
2,005,694	+				+0.2
2,005,739	+				+0.3
2,005,739	+				-0.1
2,005,996	-				-0.3
2,006,033	+	ygfF	BNILDI_09985	0.12	+0.5
2,006,074	-	ygfF	BNILDI_09985	0.18	+1.3
2,006,074	-	ygfF	BNILDI_09985	0.18	+0.2
2,006,396	+	ygfF	BNILDI_09985	0.61	+0.3
2,006,396	+	ygfF	BNILDI_09985	0.61	+1.2
2,006,396	+	ygfF	BNILDI_09985	0.61	-0.6
2,006,396	+	ygfF	BNILDI_09985	0.61	-1.8
2,006,397	-	ygfF	BNILDI_09985	0.61	+0.6
2,006,397	-	ygfF	BNILDI_09985	0.61	-0.2
2,006,504	-	ygfF	BNILDI_09985	0.76	-0.1
2,006,504	-	ygfF	BNILDI_09985	0.76	+1.1
2,006,504	-	ygfF	BNILDI_09985	0.76	-2.6
2,006,504	-	ygfF	BNILDI_09985	0.76	-0.8
2,006,504	-	ygfF	BNILDI_09985	0.76	+1.5
2,006,622	+				-2.0
2,006,625	+				+0.2
2,006,625	+				+0.4
2,006,626	-				+0.1
2,006,626	-				-0.6
2,006,642	+				-0.1
2,006,642	+				+0.3
2,006,643	-				-1.0