Strain Fitness in Escherichia coli ECRC62 around BNILDI_09575

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntuvrD and tnp-IS1 are separated by 195 nucleotidestnp-IS1 and insB are separated by 128 nucleotidesinsB and BNILDI_09575 are separated by 89 nucleotidesBNILDI_09575 and BNILDI_09580 are separated by 433 nucleotides BNILDI_09560: uvrD - DNA helicase, at 1,927,002 to 1,929,116 uvrD BNILDI_09565: tnp-IS1 - IS1 family transposase, at 1,929,312 to 1,929,587 tnp-IS1 BNILDI_09570: insB - Transposase and inactivated derivatives, IS1 family, at 1,929,716 to 1,930,009 insB BNILDI_09575: BNILDI_09575 - hypothetical protein, at 1,930,099 to 1,930,944 _09575 BNILDI_09580: BNILDI_09580 - hypothetical protein, at 1,931,378 to 1,931,914 _09580 Position (kb) 1930 1931Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1929.120 kb on + strandat 1929.120 kb on + strandat 1929.120 kb on + strandat 1929.120 kb on + strandat 1929.121 kb on - strandat 1929.159 kb on + strandat 1929.159 kb on + strandat 1929.159 kb on + strandat 1929.161 kb on + strandat 1929.162 kb on - strandat 1929.162 kb on - strandat 1929.162 kb on - strandat 1929.189 kb on + strandat 1929.191 kb on + strandat 1929.199 kb on - strandat 1929.219 kb on + strandat 1929.235 kb on - strandat 1929.236 kb on + strandat 1929.287 kb on - strandat 1929.287 kb on - strandat 1930.007 kb on + strandat 1930.038 kb on - strandat 1930.182 kb on + strandat 1930.182 kb on + strandat 1930.201 kb on + strand, within BNILDI_09575at 1930.239 kb on - strand, within BNILDI_09575at 1930.239 kb on - strand, within BNILDI_09575at 1930.275 kb on + strand, within BNILDI_09575at 1930.275 kb on + strand, within BNILDI_09575at 1930.282 kb on - strand, within BNILDI_09575at 1930.285 kb on + strand, within BNILDI_09575at 1930.406 kb on + strand, within BNILDI_09575at 1930.418 kb on - strand, within BNILDI_09575at 1930.429 kb on + strand, within BNILDI_09575at 1930.429 kb on + strand, within BNILDI_09575at 1930.429 kb on + strand, within BNILDI_09575at 1930.430 kb on - strand, within BNILDI_09575at 1930.430 kb on - strand, within BNILDI_09575at 1930.430 kb on - strand, within BNILDI_09575at 1930.445 kb on + strand, within BNILDI_09575at 1930.446 kb on - strand, within BNILDI_09575at 1930.458 kb on + strand, within BNILDI_09575at 1930.491 kb on + strand, within BNILDI_09575at 1930.492 kb on - strand, within BNILDI_09575at 1930.600 kb on + strand, within BNILDI_09575at 1930.600 kb on + strand, within BNILDI_09575at 1930.600 kb on + strand, within BNILDI_09575at 1930.601 kb on - strand, within BNILDI_09575at 1930.602 kb on + strand, within BNILDI_09575at 1930.603 kb on - strand, within BNILDI_09575at 1930.609 kb on + strand, within BNILDI_09575at 1930.632 kb on + strand, within BNILDI_09575at 1930.634 kb on + strand, within BNILDI_09575at 1930.650 kb on + strand, within BNILDI_09575at 1930.650 kb on + strand, within BNILDI_09575at 1930.650 kb on + strand, within BNILDI_09575at 1930.652 kb on + strand, within BNILDI_09575at 1930.749 kb on + strand, within BNILDI_09575at 1930.750 kb on - strand, within BNILDI_09575at 1930.768 kb on + strand, within BNILDI_09575at 1930.768 kb on + strand, within BNILDI_09575at 1930.769 kb on - strand, within BNILDI_09575at 1930.773 kb on - strand, within BNILDI_09575at 1930.773 kb on - strand, within BNILDI_09575at 1930.847 kb on + strand, within BNILDI_09575at 1930.961 kb on - strandat 1931.003 kb on + strandat 1931.016 kb on + strandat 1931.016 kb on + strandat 1931.016 kb on + strandat 1931.089 kb on - strandat 1931.183 kb on - strandat 1931.183 kb on - strandat 1931.242 kb on - strandat 1931.266 kb on - strandat 1931.266 kb on - strandat 1931.338 kb on - strandat 1931.396 kb on - strandat 1931.399 kb on + strandat 1931.400 kb on - strandat 1931.400 kb on - strandat 1931.402 kb on - strandat 1931.405 kb on + strandat 1931.406 kb on - strandat 1931.489 kb on + strand, within BNILDI_09580at 1931.605 kb on - strand, within BNILDI_09580at 1931.621 kb on - strand, within BNILDI_09580at 1931.624 kb on - strand, within BNILDI_09580at 1931.624 kb on - strand, within BNILDI_09580at 1931.625 kb on + strand, within BNILDI_09580at 1931.625 kb on + strand, within BNILDI_09580at 1931.651 kb on - strand, within BNILDI_09580at 1931.671 kb on - strand, within BNILDI_09580at 1931.671 kb on - strand, within BNILDI_09580at 1931.750 kb on + strand, within BNILDI_09580at 1931.831 kb on - strand, within BNILDI_09580at 1931.831 kb on - strand, within BNILDI_09580at 1931.831 kb on - strand, within BNILDI_09580at 1931.879 kb on + strandat 1931.879 kb on + strandat 1931.880 kb on - strandat 1931.908 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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1,929,120 + +1.4
1,929,120 + -0.0
1,929,120 + +0.1
1,929,120 + -0.1
1,929,121 - -1.0
1,929,159 + -0.7
1,929,159 + +0.1
1,929,159 + -0.1
1,929,161 + +1.0
1,929,162 - -1.1
1,929,162 - +0.1
1,929,162 - +1.5
1,929,189 + +0.7
1,929,191 + +0.1
1,929,199 - -2.5
1,929,219 + +2.9
1,929,235 - -0.4
1,929,236 + +1.0
1,929,287 - +0.1
1,929,287 - +1.6
1,930,007 + +1.3
1,930,038 - -1.1
1,930,182 + +0.4
1,930,182 + -0.2
1,930,201 + BNILDI_09575 0.12 -2.3
1,930,239 - BNILDI_09575 0.17 +0.1
1,930,239 - BNILDI_09575 0.17 -0.7
1,930,275 + BNILDI_09575 0.21 +0.5
1,930,275 + BNILDI_09575 0.21 -0.4
1,930,282 - BNILDI_09575 0.22 -0.5
1,930,285 + BNILDI_09575 0.22 -0.3
1,930,406 + BNILDI_09575 0.36 +0.9
1,930,418 - BNILDI_09575 0.38 +0.6
1,930,429 + BNILDI_09575 0.39 +0.2
1,930,429 + BNILDI_09575 0.39 +0.8
1,930,429 + BNILDI_09575 0.39 +0.3
1,930,430 - BNILDI_09575 0.39 +0.8
1,930,430 - BNILDI_09575 0.39 -3.3
1,930,430 - BNILDI_09575 0.39 -0.3
1,930,445 + BNILDI_09575 0.41 +0.1
1,930,446 - BNILDI_09575 0.41 +0.4
1,930,458 + BNILDI_09575 0.42 +0.1
1,930,491 + BNILDI_09575 0.46 +0.2
1,930,492 - BNILDI_09575 0.46 +0.2
1,930,600 + BNILDI_09575 0.59 -1.0
1,930,600 + BNILDI_09575 0.59 +0.3
1,930,600 + BNILDI_09575 0.59 -0.3
1,930,601 - BNILDI_09575 0.59 -0.1
1,930,602 + BNILDI_09575 0.59 -0.1
1,930,603 - BNILDI_09575 0.60 -1.6
1,930,609 + BNILDI_09575 0.60 -0.5
1,930,632 + BNILDI_09575 0.63 +1.8
1,930,634 + BNILDI_09575 0.63 -1.3
1,930,650 + BNILDI_09575 0.65 +0.1
1,930,650 + BNILDI_09575 0.65 -0.0
1,930,650 + BNILDI_09575 0.65 -1.1
1,930,652 + BNILDI_09575 0.65 -0.1
1,930,749 + BNILDI_09575 0.77 +0.3
1,930,750 - BNILDI_09575 0.77 -2.9
1,930,768 + BNILDI_09575 0.79 +0.6
1,930,768 + BNILDI_09575 0.79 -0.1
1,930,769 - BNILDI_09575 0.79 -0.1
1,930,773 - BNILDI_09575 0.80 +0.6
1,930,773 - BNILDI_09575 0.80 -0.7
1,930,847 + BNILDI_09575 0.88 +0.4
1,930,961 - -1.0
1,931,003 + -0.0
1,931,016 + -0.2
1,931,016 + -0.1
1,931,016 + +2.0
1,931,089 - -1.7
1,931,183 - -0.5
1,931,183 - -1.2
1,931,242 - -1.0
1,931,266 - +1.0
1,931,266 - -0.5
1,931,338 - -3.4
1,931,396 - -0.2
1,931,399 + -0.2
1,931,400 - +0.2
1,931,400 - +0.4
1,931,402 - +0.7
1,931,405 + -1.5
1,931,406 - -1.0
1,931,489 + BNILDI_09580 0.21 +0.4
1,931,605 - BNILDI_09580 0.42 -1.0
1,931,621 - BNILDI_09580 0.45 +0.4
1,931,624 - BNILDI_09580 0.46 -0.4
1,931,624 - BNILDI_09580 0.46 -1.7
1,931,625 + BNILDI_09580 0.46 -0.8
1,931,625 + BNILDI_09580 0.46 -0.3
1,931,651 - BNILDI_09580 0.51 -0.5
1,931,671 - BNILDI_09580 0.55 +0.5
1,931,671 - BNILDI_09580 0.55 -0.5
1,931,750 + BNILDI_09580 0.69 +0.4
1,931,831 - BNILDI_09580 0.84 +0.1
1,931,831 - BNILDI_09580 0.84 +0.1
1,931,831 - BNILDI_09580 0.84 -0.4
1,931,879 + -0.3
1,931,879 + -0.9
1,931,880 - -1.4
1,931,908 + +0.2

Or see this region's nucleotide sequence