Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt uvrD and tnp-IS1 are separated by 195 nucleotides tnp-IS1 and insB are separated by 128 nucleotides insB and BNILDI_09575 are separated by 89 nucleotides BNILDI_09575 and BNILDI_09580 are separated by 433 nucleotides
BNILDI_09560: uvrD - DNA helicase, at 1,927,002 to 1,929,116
uvrD
BNILDI_09565: tnp-IS1 - IS1 family transposase, at 1,929,312 to 1,929,587
tnp-IS1
BNILDI_09570: insB - Transposase and inactivated derivatives, IS1 family, at 1,929,716 to 1,930,009
insB
BNILDI_09575: BNILDI_09575 - hypothetical protein, at 1,930,099 to 1,930,944
_09575
BNILDI_09580: BNILDI_09580 - hypothetical protein, at 1,931,378 to 1,931,914
_09580
Position (kb)
1930
1931 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1929.120 kb on + strand at 1929.120 kb on + strand at 1929.120 kb on + strand at 1929.120 kb on + strand at 1929.121 kb on - strand at 1929.159 kb on + strand at 1929.159 kb on + strand at 1929.159 kb on + strand at 1929.161 kb on + strand at 1929.162 kb on - strand at 1929.162 kb on - strand at 1929.162 kb on - strand at 1929.189 kb on + strand at 1929.191 kb on + strand at 1929.199 kb on - strand at 1929.219 kb on + strand at 1929.235 kb on - strand at 1929.236 kb on + strand at 1929.287 kb on - strand at 1929.287 kb on - strand at 1930.007 kb on + strand at 1930.038 kb on - strand at 1930.182 kb on + strand at 1930.182 kb on + strand at 1930.201 kb on + strand, within BNILDI_09575 at 1930.239 kb on - strand, within BNILDI_09575 at 1930.239 kb on - strand, within BNILDI_09575 at 1930.275 kb on + strand, within BNILDI_09575 at 1930.275 kb on + strand, within BNILDI_09575 at 1930.282 kb on - strand, within BNILDI_09575 at 1930.285 kb on + strand, within BNILDI_09575 at 1930.406 kb on + strand, within BNILDI_09575 at 1930.418 kb on - strand, within BNILDI_09575 at 1930.429 kb on + strand, within BNILDI_09575 at 1930.429 kb on + strand, within BNILDI_09575 at 1930.429 kb on + strand, within BNILDI_09575 at 1930.430 kb on - strand, within BNILDI_09575 at 1930.430 kb on - strand, within BNILDI_09575 at 1930.430 kb on - strand, within BNILDI_09575 at 1930.445 kb on + strand, within BNILDI_09575 at 1930.446 kb on - strand, within BNILDI_09575 at 1930.458 kb on + strand, within BNILDI_09575 at 1930.491 kb on + strand, within BNILDI_09575 at 1930.492 kb on - strand, within BNILDI_09575 at 1930.600 kb on + strand, within BNILDI_09575 at 1930.600 kb on + strand, within BNILDI_09575 at 1930.600 kb on + strand, within BNILDI_09575 at 1930.601 kb on - strand, within BNILDI_09575 at 1930.602 kb on + strand, within BNILDI_09575 at 1930.603 kb on - strand, within BNILDI_09575 at 1930.609 kb on + strand, within BNILDI_09575 at 1930.632 kb on + strand, within BNILDI_09575 at 1930.634 kb on + strand, within BNILDI_09575 at 1930.650 kb on + strand, within BNILDI_09575 at 1930.650 kb on + strand, within BNILDI_09575 at 1930.650 kb on + strand, within BNILDI_09575 at 1930.652 kb on + strand, within BNILDI_09575 at 1930.749 kb on + strand, within BNILDI_09575 at 1930.750 kb on - strand, within BNILDI_09575 at 1930.768 kb on + strand, within BNILDI_09575 at 1930.768 kb on + strand, within BNILDI_09575 at 1930.769 kb on - strand, within BNILDI_09575 at 1930.773 kb on - strand, within BNILDI_09575 at 1930.773 kb on - strand, within BNILDI_09575 at 1930.847 kb on + strand, within BNILDI_09575 at 1930.961 kb on - strand at 1931.003 kb on + strand at 1931.016 kb on + strand at 1931.016 kb on + strand at 1931.016 kb on + strand at 1931.089 kb on - strand at 1931.183 kb on - strand at 1931.183 kb on - strand at 1931.242 kb on - strand at 1931.266 kb on - strand at 1931.266 kb on - strand at 1931.338 kb on - strand at 1931.396 kb on - strand at 1931.399 kb on + strand at 1931.400 kb on - strand at 1931.400 kb on - strand at 1931.402 kb on - strand at 1931.405 kb on + strand at 1931.406 kb on - strand at 1931.489 kb on + strand, within BNILDI_09580 at 1931.605 kb on - strand, within BNILDI_09580 at 1931.621 kb on - strand, within BNILDI_09580 at 1931.624 kb on - strand, within BNILDI_09580 at 1931.624 kb on - strand, within BNILDI_09580 at 1931.625 kb on + strand, within BNILDI_09580 at 1931.625 kb on + strand, within BNILDI_09580 at 1931.651 kb on - strand, within BNILDI_09580 at 1931.671 kb on - strand, within BNILDI_09580 at 1931.671 kb on - strand, within BNILDI_09580 at 1931.750 kb on + strand, within BNILDI_09580 at 1931.831 kb on - strand, within BNILDI_09580 at 1931.831 kb on - strand, within BNILDI_09580 at 1931.831 kb on - strand, within BNILDI_09580 at 1931.879 kb on + strand at 1931.879 kb on + strand at 1931.880 kb on - strand at 1931.908 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 1,929,120 + +1.4 1,929,120 + -0.0 1,929,120 + +0.1 1,929,120 + -0.1 1,929,121 - -1.0 1,929,159 + -0.7 1,929,159 + +0.1 1,929,159 + -0.1 1,929,161 + +1.0 1,929,162 - -1.1 1,929,162 - +0.1 1,929,162 - +1.5 1,929,189 + +0.7 1,929,191 + +0.1 1,929,199 - -2.5 1,929,219 + +2.9 1,929,235 - -0.4 1,929,236 + +1.0 1,929,287 - +0.1 1,929,287 - +1.6 1,930,007 + +1.3 1,930,038 - -1.1 1,930,182 + +0.4 1,930,182 + -0.2 1,930,201 + BNILDI_09575 0.12 -2.3 1,930,239 - BNILDI_09575 0.17 +0.1 1,930,239 - BNILDI_09575 0.17 -0.7 1,930,275 + BNILDI_09575 0.21 +0.5 1,930,275 + BNILDI_09575 0.21 -0.4 1,930,282 - BNILDI_09575 0.22 -0.5 1,930,285 + BNILDI_09575 0.22 -0.3 1,930,406 + BNILDI_09575 0.36 +0.9 1,930,418 - BNILDI_09575 0.38 +0.6 1,930,429 + BNILDI_09575 0.39 +0.2 1,930,429 + BNILDI_09575 0.39 +0.8 1,930,429 + BNILDI_09575 0.39 +0.3 1,930,430 - BNILDI_09575 0.39 +0.8 1,930,430 - BNILDI_09575 0.39 -3.3 1,930,430 - BNILDI_09575 0.39 -0.3 1,930,445 + BNILDI_09575 0.41 +0.1 1,930,446 - BNILDI_09575 0.41 +0.4 1,930,458 + BNILDI_09575 0.42 +0.1 1,930,491 + BNILDI_09575 0.46 +0.2 1,930,492 - BNILDI_09575 0.46 +0.2 1,930,600 + BNILDI_09575 0.59 -1.0 1,930,600 + BNILDI_09575 0.59 +0.3 1,930,600 + BNILDI_09575 0.59 -0.3 1,930,601 - BNILDI_09575 0.59 -0.1 1,930,602 + BNILDI_09575 0.59 -0.1 1,930,603 - BNILDI_09575 0.60 -1.6 1,930,609 + BNILDI_09575 0.60 -0.5 1,930,632 + BNILDI_09575 0.63 +1.8 1,930,634 + BNILDI_09575 0.63 -1.3 1,930,650 + BNILDI_09575 0.65 +0.1 1,930,650 + BNILDI_09575 0.65 -0.0 1,930,650 + BNILDI_09575 0.65 -1.1 1,930,652 + BNILDI_09575 0.65 -0.1 1,930,749 + BNILDI_09575 0.77 +0.3 1,930,750 - BNILDI_09575 0.77 -2.9 1,930,768 + BNILDI_09575 0.79 +0.6 1,930,768 + BNILDI_09575 0.79 -0.1 1,930,769 - BNILDI_09575 0.79 -0.1 1,930,773 - BNILDI_09575 0.80 +0.6 1,930,773 - BNILDI_09575 0.80 -0.7 1,930,847 + BNILDI_09575 0.88 +0.4 1,930,961 - -1.0 1,931,003 + -0.0 1,931,016 + -0.2 1,931,016 + -0.1 1,931,016 + +2.0 1,931,089 - -1.7 1,931,183 - -0.5 1,931,183 - -1.2 1,931,242 - -1.0 1,931,266 - +1.0 1,931,266 - -0.5 1,931,338 - -3.4 1,931,396 - -0.2 1,931,399 + -0.2 1,931,400 - +0.2 1,931,400 - +0.4 1,931,402 - +0.7 1,931,405 + -1.5 1,931,406 - -1.0 1,931,489 + BNILDI_09580 0.21 +0.4 1,931,605 - BNILDI_09580 0.42 -1.0 1,931,621 - BNILDI_09580 0.45 +0.4 1,931,624 - BNILDI_09580 0.46 -0.4 1,931,624 - BNILDI_09580 0.46 -1.7 1,931,625 + BNILDI_09580 0.46 -0.8 1,931,625 + BNILDI_09580 0.46 -0.3 1,931,651 - BNILDI_09580 0.51 -0.5 1,931,671 - BNILDI_09580 0.55 +0.5 1,931,671 - BNILDI_09580 0.55 -0.5 1,931,750 + BNILDI_09580 0.69 +0.4 1,931,831 - BNILDI_09580 0.84 +0.1 1,931,831 - BNILDI_09580 0.84 +0.1 1,931,831 - BNILDI_09580 0.84 -0.4 1,931,879 + -0.3 1,931,879 + -0.9 1,931,880 - -1.4 1,931,908 + +0.2
Or see this region's nucleotide sequence