Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt erpA and yadS are separated by 46 nucleotides yadS and btuF are separated by 37 nucleotides btuF and mtnN overlap by 8 nucleotides mtnN and dgt are separated by 83 nucleotides
BNILDI_09045: erpA - iron-sulfur cluster insertion protein ErpA, at 1,814,960 to 1,815,304
erpA
BNILDI_09050: yadS - UPF0126 inner membrane protein YadS, at 1,815,351 to 1,815,974
yadS
BNILDI_09055: btuF - vitamin B12 ABC transporter substrate-binding protein BtuF, at 1,816,012 to 1,816,812
btuF
BNILDI_09060: mtnN - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase, at 1,816,805 to 1,817,503
mtnN
BNILDI_09065: dgt - dGTPase, at 1,817,587 to 1,819,104
dgt
Position (kb)
1816
1817 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1815.302 kb on + strand at 1815.303 kb on - strand at 1815.330 kb on + strand at 1815.331 kb on - strand at 1815.389 kb on + strand at 1815.389 kb on + strand at 1815.390 kb on - strand at 1815.478 kb on + strand, within yadS at 1815.612 kb on - strand, within yadS at 1815.612 kb on - strand, within yadS at 1815.937 kb on - strand at 1815.951 kb on + strand at 1815.951 kb on + strand at 1815.952 kb on - strand at 1815.952 kb on - strand at 1815.964 kb on + strand at 1815.965 kb on - strand at 1816.014 kb on - strand at 1816.018 kb on + strand at 1816.062 kb on + strand at 1816.063 kb on - strand at 1816.134 kb on - strand, within btuF at 1816.198 kb on + strand, within btuF at 1816.199 kb on - strand, within btuF at 1816.549 kb on - strand, within btuF at 1816.664 kb on + strand, within btuF at 1816.665 kb on - strand, within btuF at 1816.665 kb on - strand, within btuF at 1816.806 kb on + strand at 1816.807 kb on - strand at 1817.538 kb on - strand at 1817.538 kb on - strand at 1817.565 kb on + strand at 1817.565 kb on + strand at 1817.700 kb on + strand at 1817.701 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 1,815,302 + +0.8 1,815,303 - -2.7 1,815,330 + +0.5 1,815,331 - +0.5 1,815,389 + -0.1 1,815,389 + +1.9 1,815,390 - +0.3 1,815,478 + yadS BNILDI_09050 0.20 -0.4 1,815,612 - yadS BNILDI_09050 0.42 +0.3 1,815,612 - yadS BNILDI_09050 0.42 -0.5 1,815,937 - +0.6 1,815,951 + +0.2 1,815,951 + -0.2 1,815,952 - -0.2 1,815,952 - +0.6 1,815,964 + +0.7 1,815,965 - +1.8 1,816,014 - -1.6 1,816,018 + +0.9 1,816,062 + +2.8 1,816,063 - +0.1 1,816,134 - btuF BNILDI_09055 0.15 -0.4 1,816,198 + btuF BNILDI_09055 0.23 +0.5 1,816,199 - btuF BNILDI_09055 0.23 -0.1 1,816,549 - btuF BNILDI_09055 0.67 +0.1 1,816,664 + btuF BNILDI_09055 0.81 -0.5 1,816,665 - btuF BNILDI_09055 0.82 -0.4 1,816,665 - btuF BNILDI_09055 0.82 +0.1 1,816,806 + +0.1 1,816,807 - +0.3 1,817,538 - -1.6 1,817,538 - -0.8 1,817,565 + -0.5 1,817,565 + -2.7 1,817,700 + -1.4 1,817,701 - -0.2
Or see this region's nucleotide sequence