Strain Fitness in Escherichia coli ECRC62 around BNILDI_08905

Experiment: L-Arabinose

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Arabinose
1,782,674	-	yadH	BNILDI_08895	0.71	-0.5
1,782,752	-	yadH	BNILDI_08895	0.81	+0.4
1,782,753	+	yadH	BNILDI_08895	0.81	+0.1
1,782,754	-	yadH	BNILDI_08895	0.81	-0.1
1,782,892	-				-0.4
1,782,895	+				-0.2
1,782,954	+				+0.0
1,782,972	+				-1.6
1,782,973	-				+0.3
1,783,006	+				-1.8
1,783,007	-				-0.9
1,783,007	-				-0.7
1,783,007	-				+0.4
1,783,016	-				+0.1
1,783,048	+	yadI	BNILDI_08900	0.10	+0.7
1,783,118	-	yadI	BNILDI_08900	0.26	+0.6
1,783,124	+	yadI	BNILDI_08900	0.28	+0.5
1,783,125	-	yadI	BNILDI_08900	0.28	-0.0
1,783,127	+	yadI	BNILDI_08900	0.28	-0.9
1,783,127	+	yadI	BNILDI_08900	0.28	-0.0
1,783,128	-	yadI	BNILDI_08900	0.29	-0.7
1,783,128	-	yadI	BNILDI_08900	0.29	+1.3
1,783,128	-	yadI	BNILDI_08900	0.29	-1.0
1,783,201	+	yadI	BNILDI_08900	0.45	+0.7
1,783,202	-	yadI	BNILDI_08900	0.45	+0.1
1,783,237	+	yadI	BNILDI_08900	0.53	+0.4
1,783,238	-	yadI	BNILDI_08900	0.54	+0.8
1,783,346	+	yadI	BNILDI_08900	0.78	+1.2
1,783,347	-	yadI	BNILDI_08900	0.78	+0.0
1,783,347	-	yadI	BNILDI_08900	0.78	+0.4
1,783,425	-				-0.2
1,783,432	-				+1.3
1,783,454	+				-0.1
1,783,455	-				-0.3
1,783,456	+				-0.9
1,783,456	+				+0.0
1,783,468	+				-0.1
1,783,579	-				-0.8
1,783,696	-	yadE	BNILDI_08905	0.15	+0.0
1,783,819	+	yadE	BNILDI_08905	0.25	-0.1
1,783,819	+	yadE	BNILDI_08905	0.25	+0.2
1,783,820	-	yadE	BNILDI_08905	0.26	+0.7
1,783,820	-	yadE	BNILDI_08905	0.26	+0.8
1,783,823	+	yadE	BNILDI_08905	0.26	-1.1
1,783,835	+	yadE	BNILDI_08905	0.27	+0.0
1,783,977	+	yadE	BNILDI_08905	0.38	-0.3
1,783,977	+	yadE	BNILDI_08905	0.38	-0.7
1,784,028	+	yadE	BNILDI_08905	0.42	-1.4
1,784,028	+	yadE	BNILDI_08905	0.42	-2.2
1,784,028	+	yadE	BNILDI_08905	0.42	-0.2
1,784,029	-	yadE	BNILDI_08905	0.43	-2.6
1,784,036	+	yadE	BNILDI_08905	0.43	-0.1
1,784,073	-	yadE	BNILDI_08905	0.46	-0.3
1,784,169	+	yadE	BNILDI_08905	0.54	+0.6
1,784,261	-	yadE	BNILDI_08905	0.61	-0.0
1,784,300	+	yadE	BNILDI_08905	0.65	-0.3
1,784,474	+	yadE	BNILDI_08905	0.79	+1.7
1,784,474	+	yadE	BNILDI_08905	0.79	-2.8
1,784,535	+	yadE	BNILDI_08905	0.84	+0.6
1,784,670	+				+0.7
1,784,670	+				+1.2
1,784,677	+				-0.0
1,784,677	+				+1.1
1,784,915	+	panD	BNILDI_08910	0.46	+0.4
1,784,947	+	panD	BNILDI_08910	0.55	-1.1
1,784,948	-	panD	BNILDI_08910	0.55	-1.1
1,785,055	+	panD	BNILDI_08910	0.83	-0.0
1,785,056	-	panD	BNILDI_08910	0.83	+2.3
1,785,119	+				-0.6
1,785,119	+				+0.1
1,785,120	-				+0.5
1,785,120	-				-0.4
1,785,120	-				+0.6
1,785,126	+				-0.1
1,785,134	+				-0.1
1,785,135	-				-0.0
1,785,270	+				+0.1
1,785,427	+				+0.5
1,785,432	-				-1.2
1,785,497	-	rpnC	BNILDI_08915	0.12	-0.8
1,785,686	+	rpnC	BNILDI_08915	0.32	-0.3
1,785,686	+	rpnC	BNILDI_08915	0.32	-2.7
1,785,686	+	rpnC	BNILDI_08915	0.32	+0.2
1,785,686	+	rpnC	BNILDI_08915	0.32	-0.9
1,785,687	-	rpnC	BNILDI_08915	0.33	-1.0