Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt creA and creB are separated by 12 nucleotides creB and creC overlap by 1 nucleotides creC and creD are separated by 57 nucleotides
BNILDI_08125: creA - protein CreA, at 1,621,324 to 1,621,797
creA
BNILDI_08130: creB - two-component system response regulator CreB, at 1,621,810 to 1,622,499
creB
BNILDI_08135: creC - two-component system sensor histidine kinase CreC, at 1,622,499 to 1,623,923
creC
BNILDI_08140: creD - cell envelope integrity protein CreD, at 1,623,981 to 1,625,333
creD
Position (kb) 1622
1623
1624 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1621.518 kb on + strand, within creA at 1621.518 kb on + strand, within creA at 1621.605 kb on + strand, within creA at 1621.631 kb on + strand, within creA at 1621.632 kb on - strand, within creA at 1621.632 kb on - strand, within creA at 1621.635 kb on - strand, within creA at 1621.662 kb on + strand, within creA at 1621.796 kb on - strand at 1621.809 kb on + strand at 1621.809 kb on + strand at 1621.810 kb on - strand at 1621.810 kb on - strand at 1621.832 kb on + strand at 1621.870 kb on + strand at 1621.870 kb on + strand at 1621.871 kb on - strand at 1622.015 kb on + strand, within creB at 1622.110 kb on + strand, within creB at 1622.110 kb on + strand, within creB at 1622.110 kb on + strand, within creB at 1622.110 kb on + strand, within creB at 1622.209 kb on - strand, within creB at 1622.209 kb on - strand, within creB at 1622.345 kb on + strand, within creB at 1622.345 kb on + strand, within creB at 1622.346 kb on - strand, within creB at 1622.346 kb on - strand, within creB at 1622.380 kb on + strand, within creB at 1622.406 kb on + strand, within creB at 1622.406 kb on + strand, within creB at 1622.407 kb on - strand, within creB at 1622.457 kb on + strand at 1622.498 kb on - strand at 1622.712 kb on - strand, within creC at 1622.775 kb on + strand, within creC at 1622.775 kb on + strand, within creC at 1622.776 kb on - strand, within creC at 1622.776 kb on - strand, within creC at 1622.784 kb on + strand, within creC at 1622.785 kb on - strand, within creC at 1622.785 kb on - strand, within creC at 1622.786 kb on + strand, within creC at 1622.786 kb on + strand, within creC at 1622.787 kb on - strand, within creC at 1622.943 kb on + strand, within creC at 1622.943 kb on + strand, within creC at 1622.943 kb on + strand, within creC at 1622.943 kb on + strand, within creC at 1622.944 kb on - strand, within creC at 1622.944 kb on - strand, within creC at 1622.978 kb on + strand, within creC at 1623.145 kb on - strand, within creC at 1623.145 kb on - strand, within creC at 1623.167 kb on + strand, within creC at 1623.167 kb on + strand, within creC at 1623.198 kb on - strand, within creC at 1623.233 kb on + strand, within creC at 1623.273 kb on + strand, within creC at 1623.273 kb on + strand, within creC at 1623.274 kb on - strand, within creC at 1623.298 kb on + strand, within creC at 1623.299 kb on - strand, within creC at 1623.341 kb on - strand, within creC at 1623.364 kb on + strand, within creC at 1623.422 kb on - strand, within creC at 1623.430 kb on + strand, within creC at 1623.431 kb on - strand, within creC at 1623.496 kb on + strand, within creC at 1623.496 kb on + strand, within creC at 1623.553 kb on + strand, within creC at 1623.553 kb on + strand, within creC at 1623.553 kb on + strand, within creC at 1623.554 kb on - strand, within creC at 1623.561 kb on - strand, within creC at 1623.622 kb on + strand, within creC at 1623.645 kb on - strand, within creC at 1623.769 kb on - strand, within creC at 1623.921 kb on + strand at 1623.922 kb on - strand at 1623.922 kb on - strand at 1623.922 kb on - strand at 1623.922 kb on - strand at 1623.980 kb on + strand at 1623.981 kb on - strand at 1624.030 kb on + strand at 1624.031 kb on - strand at 1624.031 kb on - strand at 1624.182 kb on + strand, within creD at 1624.184 kb on + strand, within creD at 1624.203 kb on - strand, within creD at 1624.302 kb on + strand, within creD at 1624.303 kb on - strand, within creD at 1624.331 kb on - strand, within creD at 1624.337 kb on - strand, within creD at 1624.385 kb on + strand, within creD at 1624.386 kb on - strand, within creD at 1624.393 kb on + strand, within creD at 1624.393 kb on + strand, within creD at 1624.407 kb on - strand, within creD at 1624.502 kb on - strand, within creD at 1624.526 kb on + strand, within creD at 1624.527 kb on - strand, within creD at 1624.706 kb on + strand, within creD at 1624.752 kb on - strand, within creD at 1624.755 kb on - strand, within creD at 1624.872 kb on + strand, within creD
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 1,621,518 + creA BNILDI_08125 0.41 -1.4 1,621,518 + creA BNILDI_08125 0.41 +0.3 1,621,605 + creA BNILDI_08125 0.59 +0.0 1,621,631 + creA BNILDI_08125 0.65 +0.6 1,621,632 - creA BNILDI_08125 0.65 -0.4 1,621,632 - creA BNILDI_08125 0.65 +0.1 1,621,635 - creA BNILDI_08125 0.66 +0.3 1,621,662 + creA BNILDI_08125 0.71 -0.8 1,621,796 - +0.1 1,621,809 + -0.0 1,621,809 + +1.5 1,621,810 - +0.3 1,621,810 - -0.3 1,621,832 + +1.7 1,621,870 + -0.4 1,621,870 + +0.8 1,621,871 - -2.0 1,622,015 + creB BNILDI_08130 0.30 -0.2 1,622,110 + creB BNILDI_08130 0.43 +0.5 1,622,110 + creB BNILDI_08130 0.43 -0.2 1,622,110 + creB BNILDI_08130 0.43 +0.2 1,622,110 + creB BNILDI_08130 0.43 +0.1 1,622,209 - creB BNILDI_08130 0.58 -0.4 1,622,209 - creB BNILDI_08130 0.58 +0.1 1,622,345 + creB BNILDI_08130 0.78 +0.6 1,622,345 + creB BNILDI_08130 0.78 -0.4 1,622,346 - creB BNILDI_08130 0.78 +2.1 1,622,346 - creB BNILDI_08130 0.78 -1.4 1,622,380 + creB BNILDI_08130 0.83 +0.3 1,622,406 + creB BNILDI_08130 0.86 -2.1 1,622,406 + creB BNILDI_08130 0.86 -0.1 1,622,407 - creB BNILDI_08130 0.87 +0.4 1,622,457 + -2.0 1,622,498 - +0.3 1,622,712 - creC BNILDI_08135 0.15 +1.0 1,622,775 + creC BNILDI_08135 0.19 +0.4 1,622,775 + creC BNILDI_08135 0.19 +0.1 1,622,776 - creC BNILDI_08135 0.19 +0.2 1,622,776 - creC BNILDI_08135 0.19 -0.8 1,622,784 + creC BNILDI_08135 0.20 -0.8 1,622,785 - creC BNILDI_08135 0.20 -1.7 1,622,785 - creC BNILDI_08135 0.20 -0.5 1,622,786 + creC BNILDI_08135 0.20 -0.1 1,622,786 + creC BNILDI_08135 0.20 +0.9 1,622,787 - creC BNILDI_08135 0.20 -0.1 1,622,943 + creC BNILDI_08135 0.31 -0.2 1,622,943 + creC BNILDI_08135 0.31 +0.3 1,622,943 + creC BNILDI_08135 0.31 +0.2 1,622,943 + creC BNILDI_08135 0.31 -1.1 1,622,944 - creC BNILDI_08135 0.31 -3.0 1,622,944 - creC BNILDI_08135 0.31 -1.0 1,622,978 + creC BNILDI_08135 0.34 -1.2 1,623,145 - creC BNILDI_08135 0.45 -0.1 1,623,145 - creC BNILDI_08135 0.45 +0.9 1,623,167 + creC BNILDI_08135 0.47 -1.3 1,623,167 + creC BNILDI_08135 0.47 -1.0 1,623,198 - creC BNILDI_08135 0.49 +0.3 1,623,233 + creC BNILDI_08135 0.52 -0.2 1,623,273 + creC BNILDI_08135 0.54 -0.0 1,623,273 + creC BNILDI_08135 0.54 -2.3 1,623,274 - creC BNILDI_08135 0.54 -0.7 1,623,298 + creC BNILDI_08135 0.56 -0.0 1,623,299 - creC BNILDI_08135 0.56 +0.5 1,623,341 - creC BNILDI_08135 0.59 -1.3 1,623,364 + creC BNILDI_08135 0.61 +0.2 1,623,422 - creC BNILDI_08135 0.65 +0.9 1,623,430 + creC BNILDI_08135 0.65 +1.7 1,623,431 - creC BNILDI_08135 0.65 -0.0 1,623,496 + creC BNILDI_08135 0.70 +0.6 1,623,496 + creC BNILDI_08135 0.70 -0.1 1,623,553 + creC BNILDI_08135 0.74 -2.8 1,623,553 + creC BNILDI_08135 0.74 +0.0 1,623,553 + creC BNILDI_08135 0.74 +1.1 1,623,554 - creC BNILDI_08135 0.74 -2.5 1,623,561 - creC BNILDI_08135 0.75 +0.0 1,623,622 + creC BNILDI_08135 0.79 -0.0 1,623,645 - creC BNILDI_08135 0.80 +0.4 1,623,769 - creC BNILDI_08135 0.89 -0.1 1,623,921 + -0.5 1,623,922 - +0.7 1,623,922 - +1.2 1,623,922 - -1.6 1,623,922 - -0.1 1,623,980 + -1.0 1,623,981 - -0.6 1,624,030 + -0.8 1,624,031 - -0.5 1,624,031 - -1.1 1,624,182 + creD BNILDI_08140 0.15 -0.5 1,624,184 + creD BNILDI_08140 0.15 -0.3 1,624,203 - creD BNILDI_08140 0.16 -0.1 1,624,302 + creD BNILDI_08140 0.24 -0.0 1,624,303 - creD BNILDI_08140 0.24 +0.1 1,624,331 - creD BNILDI_08140 0.26 +1.1 1,624,337 - creD BNILDI_08140 0.26 -0.1 1,624,385 + creD BNILDI_08140 0.30 -0.0 1,624,386 - creD BNILDI_08140 0.30 -0.2 1,624,393 + creD BNILDI_08140 0.30 +0.8 1,624,393 + creD BNILDI_08140 0.30 +0.2 1,624,407 - creD BNILDI_08140 0.31 -0.6 1,624,502 - creD BNILDI_08140 0.39 +0.1 1,624,526 + creD BNILDI_08140 0.40 +0.1 1,624,527 - creD BNILDI_08140 0.40 +0.0 1,624,706 + creD BNILDI_08140 0.54 -0.8 1,624,752 - creD BNILDI_08140 0.57 -2.7 1,624,755 - creD BNILDI_08140 0.57 +0.8 1,624,872 + creD BNILDI_08140 0.66 -2.7
Or see this region's nucleotide sequence