Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt iadA and iadA are separated by 12 nucleotides iadA and yjiH overlap by 4 nucleotides yjiH and kptA are separated by 249 nucleotides
BNILDI_07740: iadA - beta-aspartyl-peptidase, at 1,547,185 to 1,548,357
iadA
BNILDI_07745: iadA - beta-aspartyl-peptidase, at 1,548,370 to 1,548,831
iadA
BNILDI_07750: yjiH - Uncharacterized protein YjiH, at 1,548,828 to 1,549,511
yjiH
BNILDI_07755: kptA - RNA 2'-phosphotransferase, at 1,549,761 to 1,550,183
kptA
Position (kb)
1548
1549 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1547.559 kb on + strand, within iadA at 1547.654 kb on - strand, within iadA at 1547.720 kb on + strand, within iadA at 1547.720 kb on + strand, within iadA at 1547.721 kb on - strand, within iadA at 1547.724 kb on + strand, within iadA at 1547.731 kb on + strand, within iadA at 1547.743 kb on - strand, within iadA at 1547.743 kb on - strand, within iadA at 1547.817 kb on + strand, within iadA at 1547.948 kb on + strand, within iadA at 1547.949 kb on - strand, within iadA at 1548.234 kb on + strand, within iadA at 1548.306 kb on - strand at 1548.330 kb on + strand at 1548.331 kb on - strand at 1548.505 kb on + strand, within iadA at 1548.505 kb on + strand, within iadA at 1548.506 kb on - strand, within iadA at 1548.523 kb on + strand, within iadA at 1548.597 kb on + strand, within iadA at 1548.673 kb on - strand, within iadA at 1548.768 kb on + strand, within iadA at 1548.769 kb on - strand, within iadA at 1548.799 kb on - strand at 1548.799 kb on - strand at 1548.933 kb on + strand, within yjiH at 1548.985 kb on + strand, within yjiH at 1548.986 kb on - strand, within yjiH at 1548.986 kb on - strand, within yjiH at 1549.425 kb on + strand, within yjiH at 1549.455 kb on - strand at 1549.614 kb on + strand at 1549.614 kb on + strand at 1549.615 kb on - strand at 1549.654 kb on - strand at 1549.770 kb on + strand at 1549.770 kb on + strand at 1549.771 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 1,547,559 + iadA BNILDI_07740 0.32 +0.0 1,547,654 - iadA BNILDI_07740 0.40 +0.4 1,547,720 + iadA BNILDI_07740 0.46 +0.1 1,547,720 + iadA BNILDI_07740 0.46 -0.5 1,547,721 - iadA BNILDI_07740 0.46 -0.2 1,547,724 + iadA BNILDI_07740 0.46 +0.5 1,547,731 + iadA BNILDI_07740 0.47 -2.6 1,547,743 - iadA BNILDI_07740 0.48 -0.1 1,547,743 - iadA BNILDI_07740 0.48 -1.3 1,547,817 + iadA BNILDI_07740 0.54 +0.4 1,547,948 + iadA BNILDI_07740 0.65 -0.1 1,547,949 - iadA BNILDI_07740 0.65 -1.5 1,548,234 + iadA BNILDI_07740 0.89 +0.8 1,548,306 - -0.6 1,548,330 + -1.5 1,548,331 - +0.8 1,548,505 + iadA BNILDI_07745 0.29 -0.7 1,548,505 + iadA BNILDI_07745 0.29 +0.5 1,548,506 - iadA BNILDI_07745 0.29 +1.4 1,548,523 + iadA BNILDI_07745 0.33 +0.2 1,548,597 + iadA BNILDI_07745 0.49 +0.1 1,548,673 - iadA BNILDI_07745 0.66 -3.2 1,548,768 + iadA BNILDI_07745 0.86 +1.0 1,548,769 - iadA BNILDI_07745 0.86 +0.4 1,548,799 - -1.5 1,548,799 - -0.0 1,548,933 + yjiH BNILDI_07750 0.15 +0.8 1,548,985 + yjiH BNILDI_07750 0.23 +1.1 1,548,986 - yjiH BNILDI_07750 0.23 +0.0 1,548,986 - yjiH BNILDI_07750 0.23 +0.9 1,549,425 + yjiH BNILDI_07750 0.87 -0.1 1,549,455 - +0.1 1,549,614 + +3.1 1,549,614 + +0.4 1,549,615 - -0.1 1,549,654 - +0.2 1,549,770 + +0.6 1,549,770 + -0.1 1,549,771 - +2.0
Or see this region's nucleotide sequence