Strain Fitness in Escherichia coli ECRC62 around BNILDI_07745

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntiadA and iadA are separated by 12 nucleotidesiadA and yjiH overlap by 4 nucleotidesyjiH and kptA are separated by 249 nucleotides BNILDI_07740: iadA - beta-aspartyl-peptidase, at 1,547,185 to 1,548,357 iadA BNILDI_07745: iadA - beta-aspartyl-peptidase, at 1,548,370 to 1,548,831 iadA BNILDI_07750: yjiH - Uncharacterized protein YjiH, at 1,548,828 to 1,549,511 yjiH BNILDI_07755: kptA - RNA 2'-phosphotransferase, at 1,549,761 to 1,550,183 kptA Position (kb) 1548 1549Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1547.559 kb on + strand, within iadAat 1547.654 kb on - strand, within iadAat 1547.720 kb on + strand, within iadAat 1547.720 kb on + strand, within iadAat 1547.721 kb on - strand, within iadAat 1547.724 kb on + strand, within iadAat 1547.731 kb on + strand, within iadAat 1547.743 kb on - strand, within iadAat 1547.743 kb on - strand, within iadAat 1547.817 kb on + strand, within iadAat 1547.948 kb on + strand, within iadAat 1547.949 kb on - strand, within iadAat 1548.234 kb on + strand, within iadAat 1548.306 kb on - strandat 1548.330 kb on + strandat 1548.331 kb on - strandat 1548.505 kb on + strand, within iadAat 1548.505 kb on + strand, within iadAat 1548.506 kb on - strand, within iadAat 1548.523 kb on + strand, within iadAat 1548.597 kb on + strand, within iadAat 1548.673 kb on - strand, within iadAat 1548.768 kb on + strand, within iadAat 1548.769 kb on - strand, within iadAat 1548.799 kb on - strandat 1548.799 kb on - strandat 1548.933 kb on + strand, within yjiHat 1548.985 kb on + strand, within yjiHat 1548.986 kb on - strand, within yjiHat 1548.986 kb on - strand, within yjiHat 1549.425 kb on + strand, within yjiHat 1549.455 kb on - strandat 1549.614 kb on + strandat 1549.614 kb on + strandat 1549.615 kb on - strandat 1549.654 kb on - strandat 1549.770 kb on + strandat 1549.770 kb on + strandat 1549.771 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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1,547,559 + iadA BNILDI_07740 0.32 +0.0
1,547,654 - iadA BNILDI_07740 0.40 +0.4
1,547,720 + iadA BNILDI_07740 0.46 +0.1
1,547,720 + iadA BNILDI_07740 0.46 -0.5
1,547,721 - iadA BNILDI_07740 0.46 -0.2
1,547,724 + iadA BNILDI_07740 0.46 +0.5
1,547,731 + iadA BNILDI_07740 0.47 -2.6
1,547,743 - iadA BNILDI_07740 0.48 -0.1
1,547,743 - iadA BNILDI_07740 0.48 -1.3
1,547,817 + iadA BNILDI_07740 0.54 +0.4
1,547,948 + iadA BNILDI_07740 0.65 -0.1
1,547,949 - iadA BNILDI_07740 0.65 -1.5
1,548,234 + iadA BNILDI_07740 0.89 +0.8
1,548,306 - -0.6
1,548,330 + -1.5
1,548,331 - +0.8
1,548,505 + iadA BNILDI_07745 0.29 -0.7
1,548,505 + iadA BNILDI_07745 0.29 +0.5
1,548,506 - iadA BNILDI_07745 0.29 +1.4
1,548,523 + iadA BNILDI_07745 0.33 +0.2
1,548,597 + iadA BNILDI_07745 0.49 +0.1
1,548,673 - iadA BNILDI_07745 0.66 -3.2
1,548,768 + iadA BNILDI_07745 0.86 +1.0
1,548,769 - iadA BNILDI_07745 0.86 +0.4
1,548,799 - -1.5
1,548,799 - -0.0
1,548,933 + yjiH BNILDI_07750 0.15 +0.8
1,548,985 + yjiH BNILDI_07750 0.23 +1.1
1,548,986 - yjiH BNILDI_07750 0.23 +0.0
1,548,986 - yjiH BNILDI_07750 0.23 +0.9
1,549,425 + yjiH BNILDI_07750 0.87 -0.1
1,549,455 - +0.1
1,549,614 + +3.1
1,549,614 + +0.4
1,549,615 - -0.1
1,549,654 - +0.2
1,549,770 + +0.6
1,549,770 + -0.1
1,549,771 - +2.0

Or see this region's nucleotide sequence