Strain Fitness in Escherichia coli ECRC62 around BNILDI_06830

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBNILDI_06825 and BNILDI_06830 are separated by 248 nucleotidesBNILDI_06830 and epmB are separated by 389 nucleotides BNILDI_06825: BNILDI_06825 - IS110-like element IS621 family transposase, at 1,367,439 to 1,368,419 _06825 BNILDI_06830: BNILDI_06830 - Protein, at 1,368,668 to 1,369,537 _06830 BNILDI_06835: epmB - EF-P beta-lysylation protein EpmB, at 1,369,927 to 1,370,955 epmB Position (kb) 1368 1369 1370Strain fitness (log2 ratio) -2 -1 0 1at 1368.669 kb on + strandat 1368.669 kb on + strandat 1368.710 kb on + strandat 1368.710 kb on + strandat 1368.711 kb on - strandat 1368.711 kb on - strandat 1368.729 kb on - strandat 1368.783 kb on + strand, within BNILDI_06830at 1368.784 kb on - strand, within BNILDI_06830at 1369.003 kb on - strand, within BNILDI_06830at 1369.067 kb on - strand, within BNILDI_06830at 1369.074 kb on - strand, within BNILDI_06830at 1369.074 kb on - strand, within BNILDI_06830at 1369.157 kb on + strand, within BNILDI_06830at 1369.363 kb on + strand, within BNILDI_06830at 1369.363 kb on + strand, within BNILDI_06830at 1369.585 kb on - strandat 1369.596 kb on - strandat 1369.615 kb on - strandat 1369.734 kb on - strandat 1369.765 kb on + strandat 1369.873 kb on - strandat 1369.873 kb on - strandat 1369.881 kb on + strandat 1369.882 kb on - strandat 1369.908 kb on - strandat 1369.921 kb on - strandat 1369.928 kb on + strandat 1369.939 kb on + strandat 1370.109 kb on - strand, within epmBat 1370.307 kb on + strand, within epmBat 1370.508 kb on - strand, within epmB

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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1,368,669 + +0.0
1,368,669 + +1.3
1,368,710 + -0.2
1,368,710 + +0.0
1,368,711 - -2.2
1,368,711 - -0.1
1,368,729 - +1.3
1,368,783 + BNILDI_06830 0.13 +1.3
1,368,784 - BNILDI_06830 0.13 -0.2
1,369,003 - BNILDI_06830 0.39 +0.0
1,369,067 - BNILDI_06830 0.46 -0.0
1,369,074 - BNILDI_06830 0.47 -0.3
1,369,074 - BNILDI_06830 0.47 -0.4
1,369,157 + BNILDI_06830 0.56 +1.1
1,369,363 + BNILDI_06830 0.80 -0.4
1,369,363 + BNILDI_06830 0.80 +0.8
1,369,585 - +0.3
1,369,596 - +0.7
1,369,615 - -0.5
1,369,734 - +1.3
1,369,765 + +0.5
1,369,873 - +0.6
1,369,873 - +1.5
1,369,881 + -0.2
1,369,882 - +0.9
1,369,908 - -2.2
1,369,921 - +0.9
1,369,928 + +0.4
1,369,939 + +0.2
1,370,109 - epmB BNILDI_06835 0.18 -0.7
1,370,307 + epmB BNILDI_06835 0.37 -0.5
1,370,508 - epmB BNILDI_06835 0.56 -0.8

Or see this region's nucleotide sequence