Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BNILDI_06825 and BNILDI_06830 are separated by 248 nucleotides BNILDI_06830 and epmB are separated by 389 nucleotides
BNILDI_06825: BNILDI_06825 - IS110-like element IS621 family transposase, at 1,367,439 to 1,368,419
_06825
BNILDI_06830: BNILDI_06830 - Protein, at 1,368,668 to 1,369,537
_06830
BNILDI_06835: epmB - EF-P beta-lysylation protein EpmB, at 1,369,927 to 1,370,955
epmB
Position (kb)
1368
1369
1370 Strain fitness (log2 ratio)
-2
-1
0
1 at 1368.669 kb on + strand at 1368.669 kb on + strand at 1368.710 kb on + strand at 1368.710 kb on + strand at 1368.711 kb on - strand at 1368.711 kb on - strand at 1368.729 kb on - strand at 1368.783 kb on + strand, within BNILDI_06830 at 1368.784 kb on - strand, within BNILDI_06830 at 1369.003 kb on - strand, within BNILDI_06830 at 1369.067 kb on - strand, within BNILDI_06830 at 1369.074 kb on - strand, within BNILDI_06830 at 1369.074 kb on - strand, within BNILDI_06830 at 1369.157 kb on + strand, within BNILDI_06830 at 1369.363 kb on + strand, within BNILDI_06830 at 1369.363 kb on + strand, within BNILDI_06830 at 1369.585 kb on - strand at 1369.596 kb on - strand at 1369.615 kb on - strand at 1369.734 kb on - strand at 1369.765 kb on + strand at 1369.873 kb on - strand at 1369.873 kb on - strand at 1369.881 kb on + strand at 1369.882 kb on - strand at 1369.908 kb on - strand at 1369.921 kb on - strand at 1369.928 kb on + strand at 1369.939 kb on + strand at 1370.109 kb on - strand, within epmB at 1370.307 kb on + strand, within epmB at 1370.508 kb on - strand, within epmB
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 1,368,669 + +0.0 1,368,669 + +1.3 1,368,710 + -0.2 1,368,710 + +0.0 1,368,711 - -2.2 1,368,711 - -0.1 1,368,729 - +1.3 1,368,783 + BNILDI_06830 0.13 +1.3 1,368,784 - BNILDI_06830 0.13 -0.2 1,369,003 - BNILDI_06830 0.39 +0.0 1,369,067 - BNILDI_06830 0.46 -0.0 1,369,074 - BNILDI_06830 0.47 -0.3 1,369,074 - BNILDI_06830 0.47 -0.4 1,369,157 + BNILDI_06830 0.56 +1.1 1,369,363 + BNILDI_06830 0.80 -0.4 1,369,363 + BNILDI_06830 0.80 +0.8 1,369,585 - +0.3 1,369,596 - +0.7 1,369,615 - -0.5 1,369,734 - +1.3 1,369,765 + +0.5 1,369,873 - +0.6 1,369,873 - +1.5 1,369,881 + -0.2 1,369,882 - +0.9 1,369,908 - -2.2 1,369,921 - +0.9 1,369,928 + +0.4 1,369,939 + +0.2 1,370,109 - epmB BNILDI_06835 0.18 -0.7 1,370,307 + epmB BNILDI_06835 0.37 -0.5 1,370,508 - epmB BNILDI_06835 0.56 -0.8
Or see this region's nucleotide sequence