Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt phnH and phnG overlap by 4 nucleotides phnG and phnF are separated by 0 nucleotides phnF and BNILDI_06595 are separated by 20 nucleotides BNILDI_06595 and phnD are separated by 61 nucleotides
BNILDI_06580: phnH - phosphonate C-P lyase system protein PhnH, at 1,315,234 to 1,315,818
phnH
BNILDI_06585: phnG - phosphonate C-P lyase system protein PhnG, at 1,315,815 to 1,316,267
phnG
BNILDI_06590: phnF - phosphonate metabolism transcriptional regulator PhnF, at 1,316,268 to 1,316,993
phnF
BNILDI_06595: BNILDI_06595 - Phosphonate ABC transporter, permease protein PhnE, at 1,317,014 to 1,317,793
_06595
BNILDI_06600: phnD - phosphonate ABC transporter substrate-binding protein, at 1,317,855 to 1,318,871
phnD
Position (kb)
1316
1317 Strain fitness (log2 ratio)
-1
0
1 at 1315.444 kb on + strand, within phnH at 1315.578 kb on + strand, within phnH at 1315.797 kb on + strand at 1315.798 kb on - strand at 1315.798 kb on - strand at 1315.935 kb on + strand, within phnG at 1316.027 kb on - strand, within phnG at 1316.384 kb on + strand, within phnF at 1316.548 kb on + strand, within phnF at 1316.560 kb on - strand, within phnF at 1316.560 kb on - strand, within phnF at 1316.800 kb on - strand, within phnF at 1316.894 kb on - strand, within phnF at 1317.020 kb on - strand at 1317.020 kb on - strand at 1317.076 kb on + strand at 1317.213 kb on + strand, within BNILDI_06595 at 1317.234 kb on - strand, within BNILDI_06595 at 1317.483 kb on + strand, within BNILDI_06595 at 1317.600 kb on + strand, within BNILDI_06595 at 1317.601 kb on - strand, within BNILDI_06595 at 1317.760 kb on + strand at 1317.761 kb on - strand at 1317.808 kb on - strand at 1317.857 kb on - strand at 1317.870 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 1,315,444 + phnH BNILDI_06580 0.36 -0.7 1,315,578 + phnH BNILDI_06580 0.59 -0.5 1,315,797 + -1.2 1,315,798 - +1.1 1,315,798 - -0.3 1,315,935 + phnG BNILDI_06585 0.26 -1.1 1,316,027 - phnG BNILDI_06585 0.47 +0.3 1,316,384 + phnF BNILDI_06590 0.16 +0.1 1,316,548 + phnF BNILDI_06590 0.39 +0.1 1,316,560 - phnF BNILDI_06590 0.40 +0.3 1,316,560 - phnF BNILDI_06590 0.40 +0.4 1,316,800 - phnF BNILDI_06590 0.73 +0.3 1,316,894 - phnF BNILDI_06590 0.86 -1.5 1,317,020 - +0.1 1,317,020 - -0.7 1,317,076 + +1.1 1,317,213 + BNILDI_06595 0.26 +0.5 1,317,234 - BNILDI_06595 0.28 +1.4 1,317,483 + BNILDI_06595 0.60 -0.2 1,317,600 + BNILDI_06595 0.75 +1.6 1,317,601 - BNILDI_06595 0.75 +0.1 1,317,760 + -0.4 1,317,761 - +0.8 1,317,808 - -0.0 1,317,857 - -0.7 1,317,870 - -0.1
Or see this region's nucleotide sequence