Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt frvR and frvX overlap by 1 nucleotides frvX and frvB overlap by 11 nucleotides
BNILDI_05465: frvR - putative frv operon regulatory protein, at 1,081,152 to 1,082,900
frvR
BNILDI_05470: frvX - aminopeptidase, at 1,082,900 to 1,083,970
frvX
BNILDI_05475: frvB - PTS fructose-like transporter subunit IIBC, at 1,083,960 to 1,085,411
frvB
Position (kb)
1082
1083
1084 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1081.952 kb on + strand, within frvR at 1081.970 kb on + strand, within frvR at 1081.971 kb on - strand, within frvR at 1082.059 kb on - strand, within frvR at 1082.061 kb on + strand, within frvR at 1082.061 kb on + strand, within frvR at 1082.062 kb on - strand, within frvR at 1082.099 kb on + strand, within frvR at 1082.100 kb on - strand, within frvR at 1082.100 kb on - strand, within frvR at 1082.163 kb on + strand, within frvR at 1082.211 kb on + strand, within frvR at 1082.211 kb on + strand, within frvR at 1082.212 kb on - strand, within frvR at 1082.259 kb on + strand, within frvR at 1082.275 kb on + strand, within frvR at 1082.341 kb on + strand, within frvR at 1082.342 kb on - strand, within frvR at 1082.391 kb on + strand, within frvR at 1082.392 kb on - strand, within frvR at 1082.556 kb on + strand, within frvR at 1082.628 kb on - strand, within frvR at 1082.640 kb on + strand, within frvR at 1082.789 kb on + strand at 1082.896 kb on - strand at 1082.901 kb on + strand at 1082.902 kb on - strand at 1082.948 kb on + strand at 1083.160 kb on + strand, within frvX at 1083.170 kb on + strand, within frvX at 1083.171 kb on - strand, within frvX at 1083.193 kb on - strand, within frvX at 1083.247 kb on + strand, within frvX at 1083.248 kb on - strand, within frvX at 1083.378 kb on + strand, within frvX at 1083.379 kb on - strand, within frvX at 1083.379 kb on - strand, within frvX at 1083.414 kb on - strand, within frvX at 1083.414 kb on - strand, within frvX at 1083.658 kb on + strand, within frvX at 1083.659 kb on - strand, within frvX at 1083.677 kb on + strand, within frvX at 1083.769 kb on + strand, within frvX at 1083.769 kb on + strand, within frvX at 1083.770 kb on - strand, within frvX at 1084.076 kb on - strand at 1084.193 kb on + strand, within frvB at 1084.194 kb on - strand, within frvB at 1084.194 kb on - strand, within frvB at 1084.236 kb on + strand, within frvB at 1084.236 kb on + strand, within frvB at 1084.237 kb on - strand, within frvB at 1084.307 kb on + strand, within frvB at 1084.393 kb on + strand, within frvB at 1084.393 kb on + strand, within frvB at 1084.393 kb on + strand, within frvB at 1084.394 kb on - strand, within frvB at 1084.576 kb on + strand, within frvB at 1084.576 kb on + strand, within frvB at 1084.576 kb on + strand, within frvB at 1084.577 kb on - strand, within frvB at 1084.577 kb on - strand, within frvB at 1084.579 kb on + strand, within frvB at 1084.580 kb on - strand, within frvB at 1084.580 kb on - strand, within frvB at 1084.645 kb on - strand, within frvB at 1084.826 kb on + strand, within frvB at 1084.826 kb on + strand, within frvB at 1084.827 kb on - strand, within frvB at 1084.827 kb on - strand, within frvB at 1084.827 kb on - strand, within frvB at 1084.827 kb on - strand, within frvB at 1084.828 kb on + strand, within frvB at 1084.828 kb on + strand, within frvB at 1084.829 kb on - strand, within frvB at 1084.829 kb on - strand, within frvB at 1084.970 kb on + strand, within frvB
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 1,081,952 + frvR BNILDI_05465 0.46 -1.7 1,081,970 + frvR BNILDI_05465 0.47 -0.7 1,081,971 - frvR BNILDI_05465 0.47 -0.4 1,082,059 - frvR BNILDI_05465 0.52 +0.0 1,082,061 + frvR BNILDI_05465 0.52 +0.0 1,082,061 + frvR BNILDI_05465 0.52 +0.0 1,082,062 - frvR BNILDI_05465 0.52 +0.5 1,082,099 + frvR BNILDI_05465 0.54 -1.9 1,082,100 - frvR BNILDI_05465 0.54 +0.3 1,082,100 - frvR BNILDI_05465 0.54 -2.9 1,082,163 + frvR BNILDI_05465 0.58 +0.2 1,082,211 + frvR BNILDI_05465 0.61 -0.3 1,082,211 + frvR BNILDI_05465 0.61 -2.1 1,082,212 - frvR BNILDI_05465 0.61 -0.9 1,082,259 + frvR BNILDI_05465 0.63 -1.1 1,082,275 + frvR BNILDI_05465 0.64 -2.0 1,082,341 + frvR BNILDI_05465 0.68 -1.1 1,082,342 - frvR BNILDI_05465 0.68 +0.9 1,082,391 + frvR BNILDI_05465 0.71 +1.5 1,082,392 - frvR BNILDI_05465 0.71 -0.5 1,082,556 + frvR BNILDI_05465 0.80 +0.4 1,082,628 - frvR BNILDI_05465 0.84 +0.2 1,082,640 + frvR BNILDI_05465 0.85 -0.3 1,082,789 + -0.8 1,082,896 - -0.5 1,082,901 + +2.7 1,082,902 - +0.3 1,082,948 + +0.3 1,083,160 + frvX BNILDI_05470 0.24 +2.6 1,083,170 + frvX BNILDI_05470 0.25 +0.3 1,083,171 - frvX BNILDI_05470 0.25 -0.3 1,083,193 - frvX BNILDI_05470 0.27 -0.0 1,083,247 + frvX BNILDI_05470 0.32 -0.2 1,083,248 - frvX BNILDI_05470 0.32 +2.5 1,083,378 + frvX BNILDI_05470 0.45 +0.2 1,083,379 - frvX BNILDI_05470 0.45 -1.1 1,083,379 - frvX BNILDI_05470 0.45 -0.6 1,083,414 - frvX BNILDI_05470 0.48 -0.5 1,083,414 - frvX BNILDI_05470 0.48 +2.3 1,083,658 + frvX BNILDI_05470 0.71 -1.1 1,083,659 - frvX BNILDI_05470 0.71 -0.3 1,083,677 + frvX BNILDI_05470 0.73 +0.2 1,083,769 + frvX BNILDI_05470 0.81 +0.1 1,083,769 + frvX BNILDI_05470 0.81 -0.0 1,083,770 - frvX BNILDI_05470 0.81 +0.1 1,084,076 - -0.4 1,084,193 + frvB BNILDI_05475 0.16 +0.7 1,084,194 - frvB BNILDI_05475 0.16 +0.3 1,084,194 - frvB BNILDI_05475 0.16 +0.1 1,084,236 + frvB BNILDI_05475 0.19 +0.3 1,084,236 + frvB BNILDI_05475 0.19 -3.3 1,084,237 - frvB BNILDI_05475 0.19 -0.7 1,084,307 + frvB BNILDI_05475 0.24 +1.1 1,084,393 + frvB BNILDI_05475 0.30 +0.0 1,084,393 + frvB BNILDI_05475 0.30 -0.1 1,084,393 + frvB BNILDI_05475 0.30 -0.2 1,084,394 - frvB BNILDI_05475 0.30 +0.6 1,084,576 + frvB BNILDI_05475 0.42 -1.2 1,084,576 + frvB BNILDI_05475 0.42 -2.4 1,084,576 + frvB BNILDI_05475 0.42 -3.1 1,084,577 - frvB BNILDI_05475 0.42 +0.3 1,084,577 - frvB BNILDI_05475 0.42 +0.2 1,084,579 + frvB BNILDI_05475 0.43 +0.3 1,084,580 - frvB BNILDI_05475 0.43 -0.2 1,084,580 - frvB BNILDI_05475 0.43 +0.4 1,084,645 - frvB BNILDI_05475 0.47 -0.9 1,084,826 + frvB BNILDI_05475 0.60 +0.5 1,084,826 + frvB BNILDI_05475 0.60 -2.0 1,084,827 - frvB BNILDI_05475 0.60 +1.5 1,084,827 - frvB BNILDI_05475 0.60 +0.9 1,084,827 - frvB BNILDI_05475 0.60 -0.3 1,084,827 - frvB BNILDI_05475 0.60 -1.3 1,084,828 + frvB BNILDI_05475 0.60 -1.4 1,084,828 + frvB BNILDI_05475 0.60 -1.5 1,084,829 - frvB BNILDI_05475 0.60 -0.6 1,084,829 - frvB BNILDI_05475 0.60 +2.0 1,084,970 + frvB BNILDI_05475 0.70 +1.7
Or see this region's nucleotide sequence