Strain Fitness in Escherichia coli ECRC62 around BNILDI_05470

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfrvR and frvX overlap by 1 nucleotidesfrvX and frvB overlap by 11 nucleotides BNILDI_05465: frvR - putative frv operon regulatory protein, at 1,081,152 to 1,082,900 frvR BNILDI_05470: frvX - aminopeptidase, at 1,082,900 to 1,083,970 frvX BNILDI_05475: frvB - PTS fructose-like transporter subunit IIBC, at 1,083,960 to 1,085,411 frvB Position (kb) 1082 1083 1084Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1081.952 kb on + strand, within frvRat 1081.970 kb on + strand, within frvRat 1081.971 kb on - strand, within frvRat 1082.059 kb on - strand, within frvRat 1082.061 kb on + strand, within frvRat 1082.061 kb on + strand, within frvRat 1082.062 kb on - strand, within frvRat 1082.099 kb on + strand, within frvRat 1082.100 kb on - strand, within frvRat 1082.100 kb on - strand, within frvRat 1082.163 kb on + strand, within frvRat 1082.211 kb on + strand, within frvRat 1082.211 kb on + strand, within frvRat 1082.212 kb on - strand, within frvRat 1082.259 kb on + strand, within frvRat 1082.275 kb on + strand, within frvRat 1082.341 kb on + strand, within frvRat 1082.342 kb on - strand, within frvRat 1082.391 kb on + strand, within frvRat 1082.392 kb on - strand, within frvRat 1082.556 kb on + strand, within frvRat 1082.628 kb on - strand, within frvRat 1082.640 kb on + strand, within frvRat 1082.789 kb on + strandat 1082.896 kb on - strandat 1082.901 kb on + strandat 1082.902 kb on - strandat 1082.948 kb on + strandat 1083.160 kb on + strand, within frvXat 1083.170 kb on + strand, within frvXat 1083.171 kb on - strand, within frvXat 1083.193 kb on - strand, within frvXat 1083.247 kb on + strand, within frvXat 1083.248 kb on - strand, within frvXat 1083.378 kb on + strand, within frvXat 1083.379 kb on - strand, within frvXat 1083.379 kb on - strand, within frvXat 1083.414 kb on - strand, within frvXat 1083.414 kb on - strand, within frvXat 1083.658 kb on + strand, within frvXat 1083.659 kb on - strand, within frvXat 1083.677 kb on + strand, within frvXat 1083.769 kb on + strand, within frvXat 1083.769 kb on + strand, within frvXat 1083.770 kb on - strand, within frvXat 1084.076 kb on - strandat 1084.193 kb on + strand, within frvBat 1084.194 kb on - strand, within frvBat 1084.194 kb on - strand, within frvBat 1084.236 kb on + strand, within frvBat 1084.236 kb on + strand, within frvBat 1084.237 kb on - strand, within frvBat 1084.307 kb on + strand, within frvBat 1084.393 kb on + strand, within frvBat 1084.393 kb on + strand, within frvBat 1084.393 kb on + strand, within frvBat 1084.394 kb on - strand, within frvBat 1084.576 kb on + strand, within frvBat 1084.576 kb on + strand, within frvBat 1084.576 kb on + strand, within frvBat 1084.577 kb on - strand, within frvBat 1084.577 kb on - strand, within frvBat 1084.579 kb on + strand, within frvBat 1084.580 kb on - strand, within frvBat 1084.580 kb on - strand, within frvBat 1084.645 kb on - strand, within frvBat 1084.826 kb on + strand, within frvBat 1084.826 kb on + strand, within frvBat 1084.827 kb on - strand, within frvBat 1084.827 kb on - strand, within frvBat 1084.827 kb on - strand, within frvBat 1084.827 kb on - strand, within frvBat 1084.828 kb on + strand, within frvBat 1084.828 kb on + strand, within frvBat 1084.829 kb on - strand, within frvBat 1084.829 kb on - strand, within frvBat 1084.970 kb on + strand, within frvB

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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1,081,952 + frvR BNILDI_05465 0.46 -1.7
1,081,970 + frvR BNILDI_05465 0.47 -0.7
1,081,971 - frvR BNILDI_05465 0.47 -0.4
1,082,059 - frvR BNILDI_05465 0.52 +0.0
1,082,061 + frvR BNILDI_05465 0.52 +0.0
1,082,061 + frvR BNILDI_05465 0.52 +0.0
1,082,062 - frvR BNILDI_05465 0.52 +0.5
1,082,099 + frvR BNILDI_05465 0.54 -1.9
1,082,100 - frvR BNILDI_05465 0.54 +0.3
1,082,100 - frvR BNILDI_05465 0.54 -2.9
1,082,163 + frvR BNILDI_05465 0.58 +0.2
1,082,211 + frvR BNILDI_05465 0.61 -0.3
1,082,211 + frvR BNILDI_05465 0.61 -2.1
1,082,212 - frvR BNILDI_05465 0.61 -0.9
1,082,259 + frvR BNILDI_05465 0.63 -1.1
1,082,275 + frvR BNILDI_05465 0.64 -2.0
1,082,341 + frvR BNILDI_05465 0.68 -1.1
1,082,342 - frvR BNILDI_05465 0.68 +0.9
1,082,391 + frvR BNILDI_05465 0.71 +1.5
1,082,392 - frvR BNILDI_05465 0.71 -0.5
1,082,556 + frvR BNILDI_05465 0.80 +0.4
1,082,628 - frvR BNILDI_05465 0.84 +0.2
1,082,640 + frvR BNILDI_05465 0.85 -0.3
1,082,789 + -0.8
1,082,896 - -0.5
1,082,901 + +2.7
1,082,902 - +0.3
1,082,948 + +0.3
1,083,160 + frvX BNILDI_05470 0.24 +2.6
1,083,170 + frvX BNILDI_05470 0.25 +0.3
1,083,171 - frvX BNILDI_05470 0.25 -0.3
1,083,193 - frvX BNILDI_05470 0.27 -0.0
1,083,247 + frvX BNILDI_05470 0.32 -0.2
1,083,248 - frvX BNILDI_05470 0.32 +2.5
1,083,378 + frvX BNILDI_05470 0.45 +0.2
1,083,379 - frvX BNILDI_05470 0.45 -1.1
1,083,379 - frvX BNILDI_05470 0.45 -0.6
1,083,414 - frvX BNILDI_05470 0.48 -0.5
1,083,414 - frvX BNILDI_05470 0.48 +2.3
1,083,658 + frvX BNILDI_05470 0.71 -1.1
1,083,659 - frvX BNILDI_05470 0.71 -0.3
1,083,677 + frvX BNILDI_05470 0.73 +0.2
1,083,769 + frvX BNILDI_05470 0.81 +0.1
1,083,769 + frvX BNILDI_05470 0.81 -0.0
1,083,770 - frvX BNILDI_05470 0.81 +0.1
1,084,076 - -0.4
1,084,193 + frvB BNILDI_05475 0.16 +0.7
1,084,194 - frvB BNILDI_05475 0.16 +0.3
1,084,194 - frvB BNILDI_05475 0.16 +0.1
1,084,236 + frvB BNILDI_05475 0.19 +0.3
1,084,236 + frvB BNILDI_05475 0.19 -3.3
1,084,237 - frvB BNILDI_05475 0.19 -0.7
1,084,307 + frvB BNILDI_05475 0.24 +1.1
1,084,393 + frvB BNILDI_05475 0.30 +0.0
1,084,393 + frvB BNILDI_05475 0.30 -0.1
1,084,393 + frvB BNILDI_05475 0.30 -0.2
1,084,394 - frvB BNILDI_05475 0.30 +0.6
1,084,576 + frvB BNILDI_05475 0.42 -1.2
1,084,576 + frvB BNILDI_05475 0.42 -2.4
1,084,576 + frvB BNILDI_05475 0.42 -3.1
1,084,577 - frvB BNILDI_05475 0.42 +0.3
1,084,577 - frvB BNILDI_05475 0.42 +0.2
1,084,579 + frvB BNILDI_05475 0.43 +0.3
1,084,580 - frvB BNILDI_05475 0.43 -0.2
1,084,580 - frvB BNILDI_05475 0.43 +0.4
1,084,645 - frvB BNILDI_05475 0.47 -0.9
1,084,826 + frvB BNILDI_05475 0.60 +0.5
1,084,826 + frvB BNILDI_05475 0.60 -2.0
1,084,827 - frvB BNILDI_05475 0.60 +1.5
1,084,827 - frvB BNILDI_05475 0.60 +0.9
1,084,827 - frvB BNILDI_05475 0.60 -0.3
1,084,827 - frvB BNILDI_05475 0.60 -1.3
1,084,828 + frvB BNILDI_05475 0.60 -1.4
1,084,828 + frvB BNILDI_05475 0.60 -1.5
1,084,829 - frvB BNILDI_05475 0.60 -0.6
1,084,829 - frvB BNILDI_05475 0.60 +2.0
1,084,970 + frvB BNILDI_05475 0.70 +1.7

Or see this region's nucleotide sequence