Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt 23S_rrna and 5S_rrna are separated by 95 nucleotides 5S_rrna and mobB are separated by 103 nucleotides mobB and mobA overlap by 19 nucleotides mobA and yihD are separated by 69 nucleotides yihD and srkA are separated by 76 nucleotides
BNILDI_05200: 23S_rrna - 23S ribosomal RNA, at 1,029,340 to 1,032,245
_rrna
BNILDI_05205: 5S_rrna - 5S ribosomal RNA, at 1,032,341 to 1,032,456
_rrna
BNILDI_05210: mobB - molybdopterin-guanine dinucleotide biosynthesis protein MobB, at 1,032,560 to 1,033,087
mobB
BNILDI_05215: mobA - molybdenum cofactor guanylyltransferase MobA, at 1,033,069 to 1,033,653
mobA
BNILDI_05220: yihD - Protein YihD, at 1,033,723 to 1,033,992
yihD
BNILDI_05225: srkA - stress response kinase SrkA, at 1,034,069 to 1,035,055
srkA
Position (kb) 1032
1033
1034 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1032.619 kb on + strand, within mobB at 1032.619 kb on + strand, within mobB at 1032.630 kb on - strand, within mobB at 1032.673 kb on + strand, within mobB at 1032.686 kb on + strand, within mobB at 1032.758 kb on - strand, within mobB at 1032.758 kb on - strand, within mobB at 1032.915 kb on + strand, within mobB at 1032.916 kb on - strand, within mobB at 1032.916 kb on - strand, within mobB at 1032.919 kb on + strand, within mobB at 1032.919 kb on + strand, within mobB at 1032.919 kb on + strand, within mobB at 1032.920 kb on - strand, within mobB at 1032.920 kb on - strand, within mobB at 1032.920 kb on - strand, within mobB at 1032.920 kb on - strand, within mobB at 1032.935 kb on - strand, within mobB at 1032.964 kb on + strand, within mobB at 1032.965 kb on - strand, within mobB at 1032.965 kb on - strand, within mobB at 1033.116 kb on + strand at 1033.119 kb on + strand at 1033.120 kb on - strand at 1033.120 kb on - strand at 1033.120 kb on - strand at 1033.120 kb on - strand at 1033.173 kb on + strand, within mobA at 1033.174 kb on - strand, within mobA at 1033.174 kb on - strand, within mobA at 1033.219 kb on + strand, within mobA at 1033.252 kb on - strand, within mobA at 1033.341 kb on + strand, within mobA at 1033.342 kb on - strand, within mobA at 1033.342 kb on - strand, within mobA at 1033.342 kb on - strand, within mobA at 1033.343 kb on + strand, within mobA at 1033.343 kb on + strand, within mobA at 1033.343 kb on + strand, within mobA at 1033.343 kb on + strand, within mobA at 1033.344 kb on - strand, within mobA at 1033.690 kb on - strand at 1033.709 kb on + strand at 1033.719 kb on + strand at 1033.719 kb on + strand at 1033.719 kb on + strand at 1033.719 kb on + strand at 1033.720 kb on - strand at 1033.722 kb on + strand at 1033.876 kb on + strand, within yihD at 1033.936 kb on + strand, within yihD at 1033.980 kb on - strand at 1034.001 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 1,032,619 + mobB BNILDI_05210 0.11 +0.1 1,032,619 + mobB BNILDI_05210 0.11 -0.1 1,032,630 - mobB BNILDI_05210 0.13 -0.1 1,032,673 + mobB BNILDI_05210 0.21 +0.3 1,032,686 + mobB BNILDI_05210 0.24 +0.7 1,032,758 - mobB BNILDI_05210 0.38 +1.0 1,032,758 - mobB BNILDI_05210 0.38 -1.5 1,032,915 + mobB BNILDI_05210 0.67 +0.6 1,032,916 - mobB BNILDI_05210 0.67 +0.9 1,032,916 - mobB BNILDI_05210 0.67 -2.0 1,032,919 + mobB BNILDI_05210 0.68 +0.1 1,032,919 + mobB BNILDI_05210 0.68 -0.4 1,032,919 + mobB BNILDI_05210 0.68 -0.1 1,032,920 - mobB BNILDI_05210 0.68 +0.2 1,032,920 - mobB BNILDI_05210 0.68 -0.7 1,032,920 - mobB BNILDI_05210 0.68 +0.6 1,032,920 - mobB BNILDI_05210 0.68 -1.1 1,032,935 - mobB BNILDI_05210 0.71 +1.0 1,032,964 + mobB BNILDI_05210 0.77 +0.5 1,032,965 - mobB BNILDI_05210 0.77 +0.0 1,032,965 - mobB BNILDI_05210 0.77 +0.0 1,033,116 + +0.3 1,033,119 + +0.0 1,033,120 - -0.5 1,033,120 - -2.0 1,033,120 - -0.0 1,033,120 - +0.3 1,033,173 + mobA BNILDI_05215 0.18 +0.3 1,033,174 - mobA BNILDI_05215 0.18 -0.4 1,033,174 - mobA BNILDI_05215 0.18 -1.2 1,033,219 + mobA BNILDI_05215 0.26 +1.3 1,033,252 - mobA BNILDI_05215 0.31 -2.5 1,033,341 + mobA BNILDI_05215 0.46 -0.8 1,033,342 - mobA BNILDI_05215 0.47 -0.2 1,033,342 - mobA BNILDI_05215 0.47 -0.6 1,033,342 - mobA BNILDI_05215 0.47 -2.0 1,033,343 + mobA BNILDI_05215 0.47 +0.1 1,033,343 + mobA BNILDI_05215 0.47 +1.9 1,033,343 + mobA BNILDI_05215 0.47 -1.2 1,033,343 + mobA BNILDI_05215 0.47 +0.2 1,033,344 - mobA BNILDI_05215 0.47 -3.6 1,033,690 - +0.4 1,033,709 + +0.2 1,033,719 + +0.2 1,033,719 + +0.6 1,033,719 + +0.4 1,033,719 + -0.1 1,033,720 - +0.4 1,033,722 + -0.8 1,033,876 + yihD BNILDI_05220 0.57 +1.0 1,033,936 + yihD BNILDI_05220 0.79 +0.4 1,033,980 - +0.0 1,034,001 - -0.9
Or see this region's nucleotide sequence