Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BNILDI_04465 and bglH are separated by 26 nucleotides bglH and bglB are separated by 85 nucleotides
BNILDI_04465: BNILDI_04465 - alpha/beta hydrolase-fold protein, at 881,479 to 882,432
_04465
BNILDI_04470: bglH - carbohydrate-specific porin BglH, at 882,459 to 884,075
bglH
BNILDI_04475: bglB - 6-phospho-beta-glucosidase BglB, at 884,161 to 885,555
bglB
Position (kb) 882
883
884
885 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 881.464 kb on + strand at 881.464 kb on + strand at 881.465 kb on - strand at 881.522 kb on - strand at 881.641 kb on - strand, within BNILDI_04465 at 881.721 kb on + strand, within BNILDI_04465 at 881.722 kb on - strand, within BNILDI_04465 at 881.895 kb on - strand, within BNILDI_04465 at 881.900 kb on + strand, within BNILDI_04465 at 881.933 kb on + strand, within BNILDI_04465 at 881.954 kb on + strand, within BNILDI_04465 at 881.955 kb on - strand, within BNILDI_04465 at 881.955 kb on - strand, within BNILDI_04465 at 881.955 kb on - strand, within BNILDI_04465 at 881.955 kb on - strand, within BNILDI_04465 at 881.991 kb on - strand, within BNILDI_04465 at 881.996 kb on - strand, within BNILDI_04465 at 882.039 kb on - strand, within BNILDI_04465 at 882.106 kb on - strand, within BNILDI_04465 at 882.118 kb on + strand, within BNILDI_04465 at 882.118 kb on + strand, within BNILDI_04465 at 882.165 kb on + strand, within BNILDI_04465 at 882.216 kb on + strand, within BNILDI_04465 at 882.318 kb on - strand, within BNILDI_04465 at 882.557 kb on - strand at 882.557 kb on - strand at 882.566 kb on - strand at 882.596 kb on + strand at 882.718 kb on + strand, within bglH at 882.734 kb on - strand, within bglH at 882.790 kb on + strand, within bglH at 882.796 kb on + strand, within bglH at 882.797 kb on - strand, within bglH at 882.840 kb on - strand, within bglH at 882.856 kb on + strand, within bglH at 882.911 kb on - strand, within bglH at 883.073 kb on - strand, within bglH at 883.083 kb on - strand, within bglH at 883.129 kb on + strand, within bglH at 883.178 kb on + strand, within bglH at 883.197 kb on - strand, within bglH at 883.238 kb on - strand, within bglH at 883.308 kb on + strand, within bglH at 883.328 kb on + strand, within bglH at 883.328 kb on + strand, within bglH at 883.383 kb on - strand, within bglH at 883.434 kb on - strand, within bglH at 883.438 kb on + strand, within bglH at 883.438 kb on + strand, within bglH at 883.438 kb on + strand, within bglH at 883.439 kb on - strand, within bglH at 883.439 kb on - strand, within bglH at 883.439 kb on - strand, within bglH at 883.439 kb on - strand, within bglH at 883.502 kb on - strand, within bglH at 883.565 kb on - strand, within bglH at 883.685 kb on - strand, within bglH at 883.685 kb on - strand, within bglH at 883.696 kb on + strand, within bglH at 883.728 kb on - strand, within bglH at 883.853 kb on - strand, within bglH at 883.872 kb on + strand, within bglH at 883.872 kb on + strand, within bglH at 883.873 kb on - strand, within bglH at 883.898 kb on + strand, within bglH at 883.922 kb on + strand at 884.076 kb on - strand at 884.076 kb on - strand at 884.253 kb on + strand at 884.342 kb on + strand, within bglB at 884.380 kb on + strand, within bglB at 884.386 kb on + strand, within bglB at 884.387 kb on - strand, within bglB at 884.657 kb on + strand, within bglB at 884.660 kb on + strand, within bglB at 884.661 kb on - strand, within bglB at 884.665 kb on - strand, within bglB at 884.731 kb on - strand, within bglB at 884.731 kb on - strand, within bglB at 884.758 kb on - strand, within bglB at 884.835 kb on + strand, within bglB at 884.883 kb on + strand, within bglB at 884.883 kb on + strand, within bglB at 884.883 kb on + strand, within bglB at 884.969 kb on + strand, within bglB
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 881,464 + +0.6 881,464 + -0.1 881,465 - +0.4 881,522 - -0.4 881,641 - BNILDI_04465 0.17 -0.7 881,721 + BNILDI_04465 0.25 -2.2 881,722 - BNILDI_04465 0.25 +0.5 881,895 - BNILDI_04465 0.44 -1.5 881,900 + BNILDI_04465 0.44 -0.6 881,933 + BNILDI_04465 0.48 +1.4 881,954 + BNILDI_04465 0.50 +0.4 881,955 - BNILDI_04465 0.50 +0.6 881,955 - BNILDI_04465 0.50 -0.1 881,955 - BNILDI_04465 0.50 +1.1 881,955 - BNILDI_04465 0.50 -0.0 881,991 - BNILDI_04465 0.54 -0.0 881,996 - BNILDI_04465 0.54 +0.1 882,039 - BNILDI_04465 0.59 +0.9 882,106 - BNILDI_04465 0.66 -0.6 882,118 + BNILDI_04465 0.67 -0.9 882,118 + BNILDI_04465 0.67 +1.0 882,165 + BNILDI_04465 0.72 -1.4 882,216 + BNILDI_04465 0.77 -0.7 882,318 - BNILDI_04465 0.88 +0.5 882,557 - -0.4 882,557 - -3.1 882,566 - -2.8 882,596 + +0.2 882,718 + bglH BNILDI_04470 0.16 +1.1 882,734 - bglH BNILDI_04470 0.17 -0.2 882,790 + bglH BNILDI_04470 0.20 -0.2 882,796 + bglH BNILDI_04470 0.21 -0.1 882,797 - bglH BNILDI_04470 0.21 -3.3 882,840 - bglH BNILDI_04470 0.24 -2.3 882,856 + bglH BNILDI_04470 0.25 -0.4 882,911 - bglH BNILDI_04470 0.28 -0.7 883,073 - bglH BNILDI_04470 0.38 +0.5 883,083 - bglH BNILDI_04470 0.39 +0.6 883,129 + bglH BNILDI_04470 0.41 +0.0 883,178 + bglH BNILDI_04470 0.44 +1.0 883,197 - bglH BNILDI_04470 0.46 +0.3 883,238 - bglH BNILDI_04470 0.48 -1.0 883,308 + bglH BNILDI_04470 0.53 +0.9 883,328 + bglH BNILDI_04470 0.54 -0.5 883,328 + bglH BNILDI_04470 0.54 +2.0 883,383 - bglH BNILDI_04470 0.57 +1.1 883,434 - bglH BNILDI_04470 0.60 -1.0 883,438 + bglH BNILDI_04470 0.61 +0.3 883,438 + bglH BNILDI_04470 0.61 +1.0 883,438 + bglH BNILDI_04470 0.61 -0.9 883,439 - bglH BNILDI_04470 0.61 -0.4 883,439 - bglH BNILDI_04470 0.61 -1.3 883,439 - bglH BNILDI_04470 0.61 +0.6 883,439 - bglH BNILDI_04470 0.61 +1.0 883,502 - bglH BNILDI_04470 0.65 +5.0 883,565 - bglH BNILDI_04470 0.68 +0.3 883,685 - bglH BNILDI_04470 0.76 +0.5 883,685 - bglH BNILDI_04470 0.76 +0.1 883,696 + bglH BNILDI_04470 0.76 -0.1 883,728 - bglH BNILDI_04470 0.78 -0.7 883,853 - bglH BNILDI_04470 0.86 -0.1 883,872 + bglH BNILDI_04470 0.87 +1.2 883,872 + bglH BNILDI_04470 0.87 -0.2 883,873 - bglH BNILDI_04470 0.87 -0.8 883,898 + bglH BNILDI_04470 0.89 +0.0 883,922 + -2.0 884,076 - -0.6 884,076 - +0.5 884,253 + +1.5 884,342 + bglB BNILDI_04475 0.13 -0.7 884,380 + bglB BNILDI_04475 0.16 +0.4 884,386 + bglB BNILDI_04475 0.16 -1.3 884,387 - bglB BNILDI_04475 0.16 +0.2 884,657 + bglB BNILDI_04475 0.36 -0.2 884,660 + bglB BNILDI_04475 0.36 +0.4 884,661 - bglB BNILDI_04475 0.36 +0.1 884,665 - bglB BNILDI_04475 0.36 -0.0 884,731 - bglB BNILDI_04475 0.41 -2.1 884,731 - bglB BNILDI_04475 0.41 +1.1 884,758 - bglB BNILDI_04475 0.43 +0.3 884,835 + bglB BNILDI_04475 0.48 +0.1 884,883 + bglB BNILDI_04475 0.52 -0.1 884,883 + bglB BNILDI_04475 0.52 -1.9 884,883 + bglB BNILDI_04475 0.52 +0.6 884,969 + bglB BNILDI_04475 0.58 -0.2
Or see this region's nucleotide sequence