Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hdeD and gadE are separated by 798 nucleotides gadE and BNILDI_03300 are separated by 0 nucleotides BNILDI_03300 and mdtE are separated by 59 nucleotides
BNILDI_03290: hdeD - acid-resistance protein HdeD, at 636,648 to 637,220
hdeD
BNILDI_03295: gadE - acid resistance transcriptional activator GadE, at 638,019 to 638,546
gadE
BNILDI_03300: BNILDI_03300 - hypothetical protein, at 638,547 to 638,825
_03300
BNILDI_03310: mdtE - multidrug transporter subunit MdtE, at 638,885 to 640,042
mdtE
Position (kb) 638
639 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 637.166 kb on - strand at 637.166 kb on - strand at 637.166 kb on - strand at 637.218 kb on + strand at 637.218 kb on + strand at 637.219 kb on - strand at 637.219 kb on - strand at 637.274 kb on - strand at 637.300 kb on + strand at 637.332 kb on - strand at 637.512 kb on - strand at 637.559 kb on + strand at 637.695 kb on + strand at 637.695 kb on + strand at 637.760 kb on + strand at 637.761 kb on - strand at 637.833 kb on - strand at 637.833 kb on - strand at 637.846 kb on - strand at 637.865 kb on + strand at 637.876 kb on + strand at 637.877 kb on - strand at 637.889 kb on + strand at 637.890 kb on - strand at 637.902 kb on - strand at 637.966 kb on + strand at 637.967 kb on - strand at 637.967 kb on - strand at 638.079 kb on - strand, within gadE at 638.160 kb on + strand, within gadE at 638.321 kb on + strand, within gadE at 638.359 kb on + strand, within gadE at 638.373 kb on - strand, within gadE at 638.408 kb on + strand, within gadE at 638.485 kb on - strand, within gadE at 638.485 kb on - strand, within gadE at 638.505 kb on - strand at 638.539 kb on - strand at 638.623 kb on - strand, within BNILDI_03300 at 638.623 kb on - strand, within BNILDI_03300 at 638.659 kb on + strand, within BNILDI_03300 at 638.659 kb on + strand, within BNILDI_03300 at 638.659 kb on + strand, within BNILDI_03300 at 638.659 kb on + strand, within BNILDI_03300 at 638.659 kb on + strand, within BNILDI_03300 at 638.660 kb on - strand, within BNILDI_03300 at 638.660 kb on - strand, within BNILDI_03300 at 638.660 kb on - strand, within BNILDI_03300 at 638.660 kb on - strand, within BNILDI_03300 at 638.660 kb on - strand, within BNILDI_03300 at 638.660 kb on - strand, within BNILDI_03300 at 638.771 kb on - strand, within BNILDI_03300 at 638.815 kb on - strand at 638.826 kb on - strand at 639.060 kb on - strand, within mdtE at 639.075 kb on + strand, within mdtE at 639.075 kb on + strand, within mdtE at 639.076 kb on - strand, within mdtE at 639.097 kb on + strand, within mdtE at 639.098 kb on - strand, within mdtE at 639.098 kb on - strand, within mdtE at 639.116 kb on - strand, within mdtE at 639.174 kb on + strand, within mdtE at 639.281 kb on + strand, within mdtE at 639.300 kb on - strand, within mdtE at 639.544 kb on - strand, within mdtE
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 637,166 - +1.0 637,166 - +0.6 637,166 - -0.8 637,218 + +0.4 637,218 + -2.7 637,219 - -1.7 637,219 - -1.4 637,274 - +0.6 637,300 + -1.6 637,332 - +0.2 637,512 - +0.2 637,559 + -0.1 637,695 + +0.0 637,695 + -0.7 637,760 + +0.3 637,761 - +0.3 637,833 - +0.8 637,833 - -0.1 637,846 - +0.2 637,865 + -0.8 637,876 + +0.2 637,877 - +1.1 637,889 + +0.6 637,890 - +0.4 637,902 - +0.4 637,966 + -0.2 637,967 - -1.8 637,967 - +0.5 638,079 - gadE BNILDI_03295 0.11 +0.2 638,160 + gadE BNILDI_03295 0.27 +1.6 638,321 + gadE BNILDI_03295 0.57 +0.4 638,359 + gadE BNILDI_03295 0.64 +0.7 638,373 - gadE BNILDI_03295 0.67 +0.1 638,408 + gadE BNILDI_03295 0.74 +0.7 638,485 - gadE BNILDI_03295 0.88 +0.5 638,485 - gadE BNILDI_03295 0.88 -0.6 638,505 - +0.8 638,539 - -0.3 638,623 - BNILDI_03300 0.27 +2.5 638,623 - BNILDI_03300 0.27 +0.5 638,659 + BNILDI_03300 0.40 -0.9 638,659 + BNILDI_03300 0.40 +1.9 638,659 + BNILDI_03300 0.40 -0.2 638,659 + BNILDI_03300 0.40 -1.9 638,659 + BNILDI_03300 0.40 +1.7 638,660 - BNILDI_03300 0.41 +2.0 638,660 - BNILDI_03300 0.41 -0.8 638,660 - BNILDI_03300 0.41 -2.9 638,660 - BNILDI_03300 0.41 -1.3 638,660 - BNILDI_03300 0.41 +0.0 638,660 - BNILDI_03300 0.41 -0.4 638,771 - BNILDI_03300 0.80 -1.5 638,815 - +0.8 638,826 - -2.5 639,060 - mdtE BNILDI_03310 0.15 -0.6 639,075 + mdtE BNILDI_03310 0.16 +0.4 639,075 + mdtE BNILDI_03310 0.16 +0.5 639,076 - mdtE BNILDI_03310 0.16 -1.0 639,097 + mdtE BNILDI_03310 0.18 +0.3 639,098 - mdtE BNILDI_03310 0.18 -0.5 639,098 - mdtE BNILDI_03310 0.18 +0.4 639,116 - mdtE BNILDI_03310 0.20 +0.1 639,174 + mdtE BNILDI_03310 0.25 +0.8 639,281 + mdtE BNILDI_03310 0.34 -0.1 639,300 - mdtE BNILDI_03310 0.36 +0.1 639,544 - mdtE BNILDI_03310 0.57 +0.3
Or see this region's nucleotide sequence