Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nikA and nikB overlap by 1 nucleotides nikB and nikC overlap by 4 nucleotides nikC and nikD overlap by 1 nucleotides
BNILDI_03070: nikA - nickel ABC transporter substrate-binding protein, at 593,543 to 595,117
nikA
BNILDI_03075: nikB - nickel ABC transporter permease subunit NikB, at 595,117 to 596,061
nikB
BNILDI_03080: nikC - nickel ABC transporter permease subunit NikC, at 596,058 to 596,891
nikC
BNILDI_03085: nikD - nickel import ATP-binding protein NikD, at 596,891 to 597,655
nikD
Position (kb) 595
596
597 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 594.279 kb on + strand, within nikA at 594.415 kb on + strand, within nikA at 594.456 kb on + strand, within nikA at 594.457 kb on - strand, within nikA at 594.458 kb on + strand, within nikA at 594.459 kb on - strand, within nikA at 594.697 kb on + strand, within nikA at 594.698 kb on - strand, within nikA at 594.752 kb on + strand, within nikA at 594.752 kb on + strand, within nikA at 595.013 kb on + strand at 595.014 kb on - strand at 595.100 kb on - strand at 595.116 kb on - strand at 595.127 kb on - strand at 595.130 kb on + strand at 595.130 kb on + strand at 595.130 kb on + strand at 595.131 kb on - strand at 595.131 kb on - strand at 595.309 kb on + strand, within nikB at 595.318 kb on + strand, within nikB at 595.359 kb on + strand, within nikB at 595.555 kb on - strand, within nikB at 595.598 kb on - strand, within nikB at 595.671 kb on + strand, within nikB at 595.672 kb on - strand, within nikB at 595.710 kb on + strand, within nikB at 595.711 kb on - strand, within nikB at 595.711 kb on - strand, within nikB at 595.711 kb on - strand, within nikB at 595.926 kb on + strand, within nikB at 595.990 kb on - strand at 596.135 kb on + strand at 596.233 kb on + strand, within nikC at 596.233 kb on + strand, within nikC at 596.233 kb on + strand, within nikC at 596.233 kb on + strand, within nikC at 596.234 kb on - strand, within nikC at 596.234 kb on - strand, within nikC at 596.244 kb on - strand, within nikC at 596.400 kb on - strand, within nikC at 596.468 kb on - strand, within nikC at 596.468 kb on - strand, within nikC at 596.468 kb on - strand, within nikC at 596.468 kb on - strand, within nikC at 596.468 kb on - strand, within nikC at 596.536 kb on + strand, within nikC at 596.663 kb on + strand, within nikC at 596.663 kb on + strand, within nikC at 596.757 kb on + strand, within nikC at 596.758 kb on - strand, within nikC at 596.758 kb on - strand, within nikC at 596.758 kb on - strand, within nikC at 596.758 kb on - strand, within nikC at 596.759 kb on + strand, within nikC at 596.889 kb on + strand at 596.911 kb on - strand at 596.914 kb on + strand at 596.914 kb on + strand at 596.915 kb on - strand at 596.915 kb on - strand at 596.915 kb on - strand at 596.955 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 594,279 + nikA BNILDI_03070 0.47 -0.2 594,415 + nikA BNILDI_03070 0.55 +0.2 594,456 + nikA BNILDI_03070 0.58 -0.4 594,457 - nikA BNILDI_03070 0.58 +0.2 594,458 + nikA BNILDI_03070 0.58 -2.8 594,459 - nikA BNILDI_03070 0.58 +0.3 594,697 + nikA BNILDI_03070 0.73 -3.1 594,698 - nikA BNILDI_03070 0.73 +0.9 594,752 + nikA BNILDI_03070 0.77 -0.6 594,752 + nikA BNILDI_03070 0.77 +0.4 595,013 + -0.2 595,014 - +0.7 595,100 - -0.7 595,116 - -0.3 595,127 - -1.2 595,130 + +0.3 595,130 + +0.8 595,130 + -0.3 595,131 - +1.5 595,131 - -1.7 595,309 + nikB BNILDI_03075 0.20 +0.7 595,318 + nikB BNILDI_03075 0.21 +0.3 595,359 + nikB BNILDI_03075 0.26 -0.2 595,555 - nikB BNILDI_03075 0.46 +0.3 595,598 - nikB BNILDI_03075 0.51 -0.2 595,671 + nikB BNILDI_03075 0.59 -1.0 595,672 - nikB BNILDI_03075 0.59 +0.2 595,710 + nikB BNILDI_03075 0.63 +0.4 595,711 - nikB BNILDI_03075 0.63 -0.0 595,711 - nikB BNILDI_03075 0.63 -0.5 595,711 - nikB BNILDI_03075 0.63 +0.1 595,926 + nikB BNILDI_03075 0.86 +1.2 595,990 - +0.1 596,135 + -0.6 596,233 + nikC BNILDI_03080 0.21 +0.8 596,233 + nikC BNILDI_03080 0.21 -0.4 596,233 + nikC BNILDI_03080 0.21 +0.4 596,233 + nikC BNILDI_03080 0.21 -0.5 596,234 - nikC BNILDI_03080 0.21 +0.4 596,234 - nikC BNILDI_03080 0.21 -0.3 596,244 - nikC BNILDI_03080 0.22 -0.5 596,400 - nikC BNILDI_03080 0.41 +0.8 596,468 - nikC BNILDI_03080 0.49 -0.8 596,468 - nikC BNILDI_03080 0.49 -0.9 596,468 - nikC BNILDI_03080 0.49 -0.2 596,468 - nikC BNILDI_03080 0.49 -0.4 596,468 - nikC BNILDI_03080 0.49 +0.9 596,536 + nikC BNILDI_03080 0.57 -2.7 596,663 + nikC BNILDI_03080 0.73 -0.5 596,663 + nikC BNILDI_03080 0.73 -0.7 596,757 + nikC BNILDI_03080 0.84 +0.8 596,758 - nikC BNILDI_03080 0.84 -0.7 596,758 - nikC BNILDI_03080 0.84 -0.8 596,758 - nikC BNILDI_03080 0.84 +0.4 596,758 - nikC BNILDI_03080 0.84 +0.5 596,759 + nikC BNILDI_03080 0.84 -0.0 596,889 + -0.1 596,911 - -0.0 596,914 + -0.1 596,914 + +0.9 596,915 - -2.5 596,915 - -2.8 596,915 - -0.3 596,955 + -0.2
Or see this region's nucleotide sequence