Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rtcR and glpR overlap by 19 nucleotides glpR and glpG are separated by 16 nucleotides glpG and glpE are separated by 44 nucleotides
BNILDI_02775: rtcR - DNA-binding transcriptional regulator RtcR, at 534,993 to 536,591
rtcR
BNILDI_02780: glpR - DeoR/GlpR family transcriptional regulator, at 536,573 to 537,331
glpR
BNILDI_02785: glpG - rhomboid family intramembrane serine protease GlpG, at 537,348 to 538,178
glpG
BNILDI_02790: glpE - thiosulfate sulfurtransferase GlpE, at 538,223 to 538,549
glpE
Position (kb) 536
537
538 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 535.706 kb on + strand, within rtcR at 535.707 kb on - strand, within rtcR at 535.823 kb on - strand, within rtcR at 536.034 kb on + strand, within rtcR at 536.112 kb on + strand, within rtcR at 536.113 kb on - strand, within rtcR at 536.160 kb on - strand, within rtcR at 536.311 kb on + strand, within rtcR at 536.327 kb on + strand, within rtcR at 536.425 kb on + strand, within rtcR at 536.425 kb on + strand, within rtcR at 536.594 kb on - strand at 536.657 kb on + strand, within glpR at 536.658 kb on - strand, within glpR at 536.658 kb on - strand, within glpR at 536.658 kb on - strand, within glpR at 536.658 kb on - strand, within glpR at 536.658 kb on - strand, within glpR at 536.678 kb on - strand, within glpR at 536.726 kb on - strand, within glpR at 536.998 kb on + strand, within glpR at 537.276 kb on + strand at 537.277 kb on - strand at 537.277 kb on - strand at 537.305 kb on - strand at 537.333 kb on + strand at 537.334 kb on - strand at 537.393 kb on + strand at 537.488 kb on + strand, within glpG at 537.488 kb on + strand, within glpG at 537.488 kb on + strand, within glpG at 537.489 kb on - strand, within glpG at 537.566 kb on - strand, within glpG at 537.566 kb on - strand, within glpG at 537.566 kb on - strand, within glpG at 537.566 kb on - strand, within glpG at 537.619 kb on + strand, within glpG at 537.620 kb on - strand, within glpG at 537.647 kb on + strand, within glpG at 537.651 kb on - strand, within glpG at 537.657 kb on + strand, within glpG at 537.657 kb on + strand, within glpG at 537.658 kb on - strand, within glpG at 537.817 kb on - strand, within glpG at 537.989 kb on - strand, within glpG at 538.121 kb on + strand at 538.123 kb on + strand at 538.123 kb on + strand at 538.166 kb on + strand at 538.214 kb on + strand at 538.215 kb on - strand at 538.216 kb on + strand at 538.217 kb on - strand at 538.234 kb on - strand at 538.288 kb on + strand, within glpE at 538.290 kb on + strand, within glpE at 538.320 kb on + strand, within glpE
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 535,706 + rtcR BNILDI_02775 0.45 -0.8 535,707 - rtcR BNILDI_02775 0.45 +0.4 535,823 - rtcR BNILDI_02775 0.52 -0.5 536,034 + rtcR BNILDI_02775 0.65 +1.1 536,112 + rtcR BNILDI_02775 0.70 -0.5 536,113 - rtcR BNILDI_02775 0.70 -1.5 536,160 - rtcR BNILDI_02775 0.73 +0.6 536,311 + rtcR BNILDI_02775 0.82 +0.5 536,327 + rtcR BNILDI_02775 0.83 -2.7 536,425 + rtcR BNILDI_02775 0.90 -0.1 536,425 + rtcR BNILDI_02775 0.90 -0.8 536,594 - -1.0 536,657 + glpR BNILDI_02780 0.11 -1.3 536,658 - glpR BNILDI_02780 0.11 -2.1 536,658 - glpR BNILDI_02780 0.11 -0.8 536,658 - glpR BNILDI_02780 0.11 -1.1 536,658 - glpR BNILDI_02780 0.11 +0.7 536,658 - glpR BNILDI_02780 0.11 -1.3 536,678 - glpR BNILDI_02780 0.14 +0.0 536,726 - glpR BNILDI_02780 0.20 +0.9 536,998 + glpR BNILDI_02780 0.56 -2.8 537,276 + -1.1 537,277 - -0.1 537,277 - -0.9 537,305 - -1.2 537,333 + -0.1 537,334 - +0.1 537,393 + -0.0 537,488 + glpG BNILDI_02785 0.17 +1.2 537,488 + glpG BNILDI_02785 0.17 +0.6 537,488 + glpG BNILDI_02785 0.17 +0.2 537,489 - glpG BNILDI_02785 0.17 -0.5 537,566 - glpG BNILDI_02785 0.26 -0.0 537,566 - glpG BNILDI_02785 0.26 +0.4 537,566 - glpG BNILDI_02785 0.26 +0.3 537,566 - glpG BNILDI_02785 0.26 -0.4 537,619 + glpG BNILDI_02785 0.33 +0.1 537,620 - glpG BNILDI_02785 0.33 -0.2 537,647 + glpG BNILDI_02785 0.36 -2.5 537,651 - glpG BNILDI_02785 0.36 -1.5 537,657 + glpG BNILDI_02785 0.37 +0.5 537,657 + glpG BNILDI_02785 0.37 +0.1 537,658 - glpG BNILDI_02785 0.37 +0.3 537,817 - glpG BNILDI_02785 0.56 -0.2 537,989 - glpG BNILDI_02785 0.77 -1.2 538,121 + -0.7 538,123 + -0.1 538,123 + -1.8 538,166 + +0.7 538,214 + +0.4 538,215 - +0.2 538,216 + -0.4 538,217 - +1.1 538,234 - +0.6 538,288 + glpE BNILDI_02790 0.20 -0.4 538,290 + glpE BNILDI_02790 0.20 +2.4 538,320 + glpE BNILDI_02790 0.30 -0.0
Or see this region's nucleotide sequence