Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yheU and prkB are separated by 53 nucleotides prkB and yhfA are separated by 54 nucleotides yhfA and crp are separated by 301 nucleotides crp and yhfK are separated by 50 nucleotides
BNILDI_02465: yheU - YheU family protein, at 466,189 to 466,407
yheU
BNILDI_02470: prkB - phosphoribulokinase, at 466,461 to 467,330
prkB
BNILDI_02475: yhfA - OsmC family protein, at 467,385 to 467,789
yhfA
BNILDI_02480: crp - cAMP-activated global transcriptional regulator CRP, at 468,091 to 468,723
crp
BNILDI_02485: yhfK - Uncharacterized protein YhfK, at 468,774 to 470,864
yhfK
Position (kb) 467
468 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 466.431 kb on + strand at 466.460 kb on + strand at 466.460 kb on + strand at 466.461 kb on - strand at 466.461 kb on - strand at 466.556 kb on - strand, within prkB at 466.556 kb on - strand, within prkB at 466.662 kb on + strand, within prkB at 466.663 kb on - strand, within prkB at 466.749 kb on + strand, within prkB at 466.749 kb on + strand, within prkB at 466.757 kb on + strand, within prkB at 466.757 kb on + strand, within prkB at 466.757 kb on + strand, within prkB at 466.757 kb on + strand, within prkB at 466.758 kb on - strand, within prkB at 466.761 kb on + strand, within prkB at 466.762 kb on - strand, within prkB at 466.762 kb on - strand, within prkB at 466.762 kb on - strand, within prkB at 466.762 kb on - strand, within prkB at 466.837 kb on + strand, within prkB at 466.837 kb on + strand, within prkB at 466.838 kb on - strand, within prkB at 466.907 kb on - strand, within prkB at 466.907 kb on - strand, within prkB at 467.029 kb on - strand, within prkB at 467.029 kb on - strand, within prkB at 467.029 kb on - strand, within prkB at 467.029 kb on - strand, within prkB at 467.031 kb on - strand, within prkB at 467.031 kb on - strand, within prkB at 467.031 kb on - strand, within prkB at 467.038 kb on - strand, within prkB at 467.038 kb on - strand, within prkB at 467.069 kb on + strand, within prkB at 467.069 kb on + strand, within prkB at 467.069 kb on + strand, within prkB at 467.070 kb on - strand, within prkB at 467.234 kb on + strand, within prkB at 467.234 kb on + strand, within prkB at 467.235 kb on - strand, within prkB at 467.235 kb on - strand, within prkB at 467.278 kb on + strand at 467.282 kb on + strand at 467.338 kb on - strand at 467.340 kb on + strand at 467.355 kb on - strand at 467.355 kb on - strand at 467.381 kb on + strand at 467.381 kb on + strand at 467.382 kb on - strand at 467.414 kb on + strand at 467.414 kb on + strand at 467.414 kb on + strand at 467.417 kb on + strand at 467.418 kb on - strand at 467.543 kb on + strand, within yhfA at 467.544 kb on - strand, within yhfA at 467.586 kb on + strand, within yhfA at 467.718 kb on + strand, within yhfA at 467.833 kb on - strand at 467.907 kb on + strand at 467.912 kb on + strand at 467.937 kb on + strand at 467.947 kb on + strand at 467.947 kb on + strand at 467.956 kb on + strand at 468.070 kb on + strand at 468.070 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 466,431 + +0.1 466,460 + +0.4 466,460 + -1.1 466,461 - -1.0 466,461 - -0.1 466,556 - prkB BNILDI_02470 0.11 -0.9 466,556 - prkB BNILDI_02470 0.11 -0.3 466,662 + prkB BNILDI_02470 0.23 +0.3 466,663 - prkB BNILDI_02470 0.23 -0.6 466,749 + prkB BNILDI_02470 0.33 -0.4 466,749 + prkB BNILDI_02470 0.33 +0.1 466,757 + prkB BNILDI_02470 0.34 -0.7 466,757 + prkB BNILDI_02470 0.34 -0.3 466,757 + prkB BNILDI_02470 0.34 -4.0 466,757 + prkB BNILDI_02470 0.34 -0.4 466,758 - prkB BNILDI_02470 0.34 -0.6 466,761 + prkB BNILDI_02470 0.34 -0.7 466,762 - prkB BNILDI_02470 0.35 +0.0 466,762 - prkB BNILDI_02470 0.35 -0.3 466,762 - prkB BNILDI_02470 0.35 +0.0 466,762 - prkB BNILDI_02470 0.35 -0.4 466,837 + prkB BNILDI_02470 0.43 -1.0 466,837 + prkB BNILDI_02470 0.43 -0.4 466,838 - prkB BNILDI_02470 0.43 -0.6 466,907 - prkB BNILDI_02470 0.51 -1.5 466,907 - prkB BNILDI_02470 0.51 +1.3 467,029 - prkB BNILDI_02470 0.65 -0.9 467,029 - prkB BNILDI_02470 0.65 -1.0 467,029 - prkB BNILDI_02470 0.65 +0.5 467,029 - prkB BNILDI_02470 0.65 -1.4 467,031 - prkB BNILDI_02470 0.66 -1.5 467,031 - prkB BNILDI_02470 0.66 -0.4 467,031 - prkB BNILDI_02470 0.66 -1.4 467,038 - prkB BNILDI_02470 0.66 -0.6 467,038 - prkB BNILDI_02470 0.66 +2.3 467,069 + prkB BNILDI_02470 0.70 -1.1 467,069 + prkB BNILDI_02470 0.70 -0.4 467,069 + prkB BNILDI_02470 0.70 -0.4 467,070 - prkB BNILDI_02470 0.70 -0.8 467,234 + prkB BNILDI_02470 0.89 -0.5 467,234 + prkB BNILDI_02470 0.89 -0.5 467,235 - prkB BNILDI_02470 0.89 -0.5 467,235 - prkB BNILDI_02470 0.89 +1.7 467,278 + -0.1 467,282 + -0.0 467,338 - +1.1 467,340 + -0.6 467,355 - -1.3 467,355 - +1.4 467,381 + -0.6 467,381 + +0.4 467,382 - +1.5 467,414 + +0.8 467,414 + +0.6 467,414 + +0.1 467,417 + +0.1 467,418 - -0.1 467,543 + yhfA BNILDI_02475 0.39 -0.6 467,544 - yhfA BNILDI_02475 0.39 -2.2 467,586 + yhfA BNILDI_02475 0.50 -1.5 467,718 + yhfA BNILDI_02475 0.82 +0.5 467,833 - +1.0 467,907 + +0.2 467,912 + -0.0 467,937 + -0.3 467,947 + -0.4 467,947 + +2.1 467,956 + -0.7 468,070 + -2.6 468,070 + -0.3
Or see this region's nucleotide sequence