Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gltB and gltD are separated by 12 nucleotides gltD and yhcG are separated by 183 nucleotides
BNILDI_01850: gltB - glutamate synthase large subunit, at 359,006 to 363,559
gltB
BNILDI_01855: gltD - glutamate synthase subunit GltD, at 363,572 to 364,990
gltD
BNILDI_01860: yhcG - Putative nuclease YhcG, at 365,174 to 366,301
yhcG
Position (kb) 363
364
365 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 362.696 kb on + strand, within gltB at 362.850 kb on - strand, within gltB at 362.894 kb on - strand, within gltB at 362.903 kb on + strand, within gltB at 362.904 kb on - strand, within gltB at 362.963 kb on + strand, within gltB at 362.963 kb on + strand, within gltB at 362.987 kb on + strand, within gltB at 363.163 kb on + strand at 363.164 kb on - strand at 363.203 kb on + strand at 363.203 kb on + strand at 363.204 kb on - strand at 363.204 kb on - strand at 363.204 kb on - strand at 363.204 kb on - strand at 363.204 kb on - strand at 363.205 kb on + strand at 363.205 kb on + strand at 363.206 kb on - strand at 363.342 kb on + strand at 363.343 kb on - strand at 363.409 kb on + strand at 363.410 kb on - strand at 363.410 kb on - strand at 363.499 kb on - strand at 363.521 kb on - strand at 363.761 kb on + strand, within gltD at 363.762 kb on - strand, within gltD at 363.762 kb on - strand, within gltD at 363.944 kb on + strand, within gltD at 363.944 kb on + strand, within gltD at 363.945 kb on - strand, within gltD at 363.945 kb on - strand, within gltD at 363.946 kb on + strand, within gltD at 363.946 kb on + strand, within gltD at 363.946 kb on + strand, within gltD at 363.946 kb on + strand, within gltD at 364.080 kb on + strand, within gltD at 364.165 kb on - strand, within gltD at 364.165 kb on - strand, within gltD at 364.265 kb on + strand, within gltD at 364.266 kb on - strand, within gltD at 364.266 kb on - strand, within gltD at 364.266 kb on - strand, within gltD at 364.343 kb on + strand, within gltD at 364.344 kb on - strand, within gltD at 364.344 kb on - strand, within gltD at 364.484 kb on - strand, within gltD at 364.513 kb on + strand, within gltD at 364.590 kb on + strand, within gltD at 364.591 kb on - strand, within gltD at 364.669 kb on + strand, within gltD at 364.735 kb on + strand, within gltD at 364.736 kb on - strand, within gltD at 364.736 kb on - strand, within gltD at 364.736 kb on - strand, within gltD at 364.966 kb on + strand at 364.967 kb on - strand at 364.969 kb on + strand at 364.988 kb on + strand at 364.988 kb on + strand at 364.989 kb on - strand at 365.087 kb on - strand at 365.090 kb on - strand at 365.090 kb on - strand at 365.127 kb on - strand at 365.129 kb on - strand at 365.172 kb on + strand at 365.173 kb on - strand at 365.230 kb on + strand at 365.297 kb on + strand, within yhcG at 365.298 kb on - strand, within yhcG at 365.298 kb on - strand, within yhcG at 365.298 kb on - strand, within yhcG at 365.298 kb on - strand, within yhcG at 365.395 kb on - strand, within yhcG at 365.406 kb on - strand, within yhcG at 365.406 kb on - strand, within yhcG at 365.406 kb on - strand, within yhcG at 365.407 kb on + strand, within yhcG at 365.407 kb on + strand, within yhcG at 365.408 kb on - strand, within yhcG at 365.502 kb on + strand, within yhcG at 365.604 kb on - strand, within yhcG at 365.604 kb on - strand, within yhcG at 365.731 kb on - strand, within yhcG
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 362,696 + gltB BNILDI_01850 0.81 -1.6 362,850 - gltB BNILDI_01850 0.84 -1.0 362,894 - gltB BNILDI_01850 0.85 -2.0 362,903 + gltB BNILDI_01850 0.86 -1.5 362,904 - gltB BNILDI_01850 0.86 -2.4 362,963 + gltB BNILDI_01850 0.87 -2.3 362,963 + gltB BNILDI_01850 0.87 -2.2 362,987 + gltB BNILDI_01850 0.87 -0.7 363,163 + +1.1 363,164 - -1.7 363,203 + -2.1 363,203 + -1.5 363,204 - -2.4 363,204 - -4.4 363,204 - +0.6 363,204 - -1.9 363,204 - -3.3 363,205 + -1.4 363,205 + -2.1 363,206 - -4.2 363,342 + +0.8 363,343 - -2.1 363,409 + -0.2 363,410 - -1.4 363,410 - -2.5 363,499 - -4.4 363,521 - +0.1 363,761 + gltD BNILDI_01855 0.13 -0.7 363,762 - gltD BNILDI_01855 0.13 -1.1 363,762 - gltD BNILDI_01855 0.13 -0.2 363,944 + gltD BNILDI_01855 0.26 -1.3 363,944 + gltD BNILDI_01855 0.26 -2.1 363,945 - gltD BNILDI_01855 0.26 -2.7 363,945 - gltD BNILDI_01855 0.26 +0.2 363,946 + gltD BNILDI_01855 0.26 -0.8 363,946 + gltD BNILDI_01855 0.26 -1.6 363,946 + gltD BNILDI_01855 0.26 -4.4 363,946 + gltD BNILDI_01855 0.26 -1.9 364,080 + gltD BNILDI_01855 0.36 -4.1 364,165 - gltD BNILDI_01855 0.42 -4.0 364,165 - gltD BNILDI_01855 0.42 -2.4 364,265 + gltD BNILDI_01855 0.49 -2.5 364,266 - gltD BNILDI_01855 0.49 -1.6 364,266 - gltD BNILDI_01855 0.49 -2.7 364,266 - gltD BNILDI_01855 0.49 +0.8 364,343 + gltD BNILDI_01855 0.54 -1.6 364,344 - gltD BNILDI_01855 0.54 -3.6 364,344 - gltD BNILDI_01855 0.54 -2.9 364,484 - gltD BNILDI_01855 0.64 -2.8 364,513 + gltD BNILDI_01855 0.66 -0.5 364,590 + gltD BNILDI_01855 0.72 -1.4 364,591 - gltD BNILDI_01855 0.72 -2.0 364,669 + gltD BNILDI_01855 0.77 -2.1 364,735 + gltD BNILDI_01855 0.82 -1.6 364,736 - gltD BNILDI_01855 0.82 -3.2 364,736 - gltD BNILDI_01855 0.82 -1.4 364,736 - gltD BNILDI_01855 0.82 -1.7 364,966 + -1.1 364,967 - -1.8 364,969 + -1.0 364,988 + -0.6 364,988 + -2.2 364,989 - -1.9 365,087 - +0.5 365,090 - -0.5 365,090 - +1.3 365,127 - -0.7 365,129 - +0.9 365,172 + +0.6 365,173 - -0.2 365,230 + -0.5 365,297 + yhcG BNILDI_01860 0.11 +0.2 365,298 - yhcG BNILDI_01860 0.11 +0.8 365,298 - yhcG BNILDI_01860 0.11 -0.4 365,298 - yhcG BNILDI_01860 0.11 +2.3 365,298 - yhcG BNILDI_01860 0.11 -2.6 365,395 - yhcG BNILDI_01860 0.20 -0.0 365,406 - yhcG BNILDI_01860 0.21 +0.2 365,406 - yhcG BNILDI_01860 0.21 -0.2 365,406 - yhcG BNILDI_01860 0.21 +0.3 365,407 + yhcG BNILDI_01860 0.21 -0.5 365,407 + yhcG BNILDI_01860 0.21 -0.7 365,408 - yhcG BNILDI_01860 0.21 +0.5 365,502 + yhcG BNILDI_01860 0.29 +1.4 365,604 - yhcG BNILDI_01860 0.38 -0.9 365,604 - yhcG BNILDI_01860 0.38 +0.1 365,731 - yhcG BNILDI_01860 0.49 -0.6
Or see this region's nucleotide sequence