Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rimP and fMet_trna are separated by 206 nucleotides fMet_trna and argG are separated by 347 nucleotides argG and yhbX are separated by 7 nucleotides
BNILDI_01635: rimP - ribosome maturation factor RimP, at 322,075 to 322,527
rimP
BNILDI_01640: fMet_trna - tRNA-fMet(cat), at 322,734 to 322,810
_trna
BNILDI_01645: argG - argininosuccinate synthase, at 323,158 to 324,501
argG
BNILDI_01650: yhbX - Putative transferase YhbX, at 324,509 to 326,134
yhbX
Position (kb) 323
324
325 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1
2
3 at 322.628 kb on - strand at 322.706 kb on - strand at 322.708 kb on - strand at 322.905 kb on + strand at 322.906 kb on - strand at 322.906 kb on - strand at 323.026 kb on - strand at 323.039 kb on + strand at 323.136 kb on + strand at 323.137 kb on - strand at 323.140 kb on + strand at 323.141 kb on - strand at 323.158 kb on - strand at 323.196 kb on + strand at 323.197 kb on - strand at 323.279 kb on - strand at 323.279 kb on - strand at 323.279 kb on - strand at 323.279 kb on - strand at 323.280 kb on + strand at 323.280 kb on + strand at 323.315 kb on - strand, within argG at 323.315 kb on - strand, within argG at 323.344 kb on + strand, within argG at 323.453 kb on - strand, within argG at 323.552 kb on - strand, within argG at 323.552 kb on - strand, within argG at 323.552 kb on - strand, within argG at 323.552 kb on - strand, within argG at 323.553 kb on + strand, within argG at 323.553 kb on + strand, within argG at 323.553 kb on + strand, within argG at 323.579 kb on - strand, within argG at 323.579 kb on - strand, within argG at 323.643 kb on + strand, within argG at 323.644 kb on - strand, within argG at 323.683 kb on - strand, within argG at 323.874 kb on - strand, within argG at 324.027 kb on + strand, within argG at 324.056 kb on + strand, within argG at 324.056 kb on + strand, within argG at 324.056 kb on + strand, within argG at 324.056 kb on + strand, within argG at 324.056 kb on + strand, within argG at 324.057 kb on - strand, within argG at 324.057 kb on - strand, within argG at 324.057 kb on - strand, within argG at 324.057 kb on - strand, within argG at 324.057 kb on - strand, within argG at 324.279 kb on + strand, within argG at 324.279 kb on + strand, within argG at 324.302 kb on - strand, within argG at 324.361 kb on - strand, within argG at 324.381 kb on + strand at 324.622 kb on + strand at 324.624 kb on + strand at 324.624 kb on + strand at 324.625 kb on - strand at 324.625 kb on - strand at 324.691 kb on + strand, within yhbX at 324.696 kb on + strand, within yhbX at 324.696 kb on + strand, within yhbX at 324.697 kb on - strand, within yhbX at 324.700 kb on + strand, within yhbX at 324.700 kb on + strand, within yhbX at 324.705 kb on + strand, within yhbX at 324.706 kb on - strand, within yhbX at 324.775 kb on + strand, within yhbX at 324.775 kb on + strand, within yhbX at 324.792 kb on + strand, within yhbX at 324.793 kb on - strand, within yhbX at 324.793 kb on - strand, within yhbX at 324.829 kb on - strand, within yhbX at 324.876 kb on + strand, within yhbX at 324.877 kb on - strand, within yhbX at 324.931 kb on + strand, within yhbX at 324.931 kb on + strand, within yhbX at 324.957 kb on + strand, within yhbX at 325.016 kb on - strand, within yhbX at 325.041 kb on - strand, within yhbX at 325.041 kb on - strand, within yhbX at 325.072 kb on + strand, within yhbX at 325.073 kb on - strand, within yhbX at 325.094 kb on + strand, within yhbX at 325.131 kb on + strand, within yhbX at 325.166 kb on - strand, within yhbX at 325.175 kb on - strand, within yhbX at 325.235 kb on - strand, within yhbX at 325.244 kb on - strand, within yhbX at 325.260 kb on + strand, within yhbX at 325.264 kb on + strand, within yhbX at 325.326 kb on + strand, within yhbX at 325.351 kb on + strand, within yhbX at 325.351 kb on + strand, within yhbX at 325.351 kb on + strand, within yhbX at 325.406 kb on - strand, within yhbX at 325.407 kb on + strand, within yhbX at 325.413 kb on + strand, within yhbX at 325.436 kb on + strand, within yhbX at 325.462 kb on - strand, within yhbX
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 322,628 - +0.6 322,706 - -2.3 322,708 - +1.1 322,905 + -0.1 322,906 - -0.2 322,906 - -3.1 323,026 - +0.2 323,039 + +0.1 323,136 + -2.2 323,137 - -0.5 323,140 + -3.0 323,141 - -0.4 323,158 - -7.3 323,196 + -3.7 323,197 - -4.7 323,279 - -4.5 323,279 - -5.2 323,279 - -1.7 323,279 - +0.4 323,280 + -4.6 323,280 + -4.1 323,315 - argG BNILDI_01645 0.12 -3.1 323,315 - argG BNILDI_01645 0.12 -5.5 323,344 + argG BNILDI_01645 0.14 -4.1 323,453 - argG BNILDI_01645 0.22 -3.4 323,552 - argG BNILDI_01645 0.29 -2.0 323,552 - argG BNILDI_01645 0.29 -3.1 323,552 - argG BNILDI_01645 0.29 +0.1 323,552 - argG BNILDI_01645 0.29 -4.2 323,553 + argG BNILDI_01645 0.29 -3.5 323,553 + argG BNILDI_01645 0.29 -1.9 323,553 + argG BNILDI_01645 0.29 -0.8 323,579 - argG BNILDI_01645 0.31 -4.7 323,579 - argG BNILDI_01645 0.31 -3.0 323,643 + argG BNILDI_01645 0.36 -1.7 323,644 - argG BNILDI_01645 0.36 -1.4 323,683 - argG BNILDI_01645 0.39 -1.9 323,874 - argG BNILDI_01645 0.53 -4.0 324,027 + argG BNILDI_01645 0.65 -4.0 324,056 + argG BNILDI_01645 0.67 -2.2 324,056 + argG BNILDI_01645 0.67 -3.2 324,056 + argG BNILDI_01645 0.67 -2.7 324,056 + argG BNILDI_01645 0.67 -3.6 324,056 + argG BNILDI_01645 0.67 -4.2 324,057 - argG BNILDI_01645 0.67 -4.4 324,057 - argG BNILDI_01645 0.67 -1.2 324,057 - argG BNILDI_01645 0.67 -2.2 324,057 - argG BNILDI_01645 0.67 -3.3 324,057 - argG BNILDI_01645 0.67 -2.8 324,279 + argG BNILDI_01645 0.83 -2.2 324,279 + argG BNILDI_01645 0.83 -3.7 324,302 - argG BNILDI_01645 0.85 -3.4 324,361 - argG BNILDI_01645 0.90 -4.4 324,381 + -3.9 324,622 + -1.5 324,624 + +3.1 324,624 + +0.2 324,625 - -0.2 324,625 - +0.9 324,691 + yhbX BNILDI_01650 0.11 -0.6 324,696 + yhbX BNILDI_01650 0.12 -0.6 324,696 + yhbX BNILDI_01650 0.12 -0.1 324,697 - yhbX BNILDI_01650 0.12 -0.1 324,700 + yhbX BNILDI_01650 0.12 -0.2 324,700 + yhbX BNILDI_01650 0.12 -0.1 324,705 + yhbX BNILDI_01650 0.12 -0.5 324,706 - yhbX BNILDI_01650 0.12 -1.3 324,775 + yhbX BNILDI_01650 0.16 +1.2 324,775 + yhbX BNILDI_01650 0.16 +2.6 324,792 + yhbX BNILDI_01650 0.17 -0.4 324,793 - yhbX BNILDI_01650 0.17 -0.3 324,793 - yhbX BNILDI_01650 0.17 +0.8 324,829 - yhbX BNILDI_01650 0.20 -0.1 324,876 + yhbX BNILDI_01650 0.23 -0.5 324,877 - yhbX BNILDI_01650 0.23 -1.6 324,931 + yhbX BNILDI_01650 0.26 +0.1 324,931 + yhbX BNILDI_01650 0.26 +0.9 324,957 + yhbX BNILDI_01650 0.28 -1.2 325,016 - yhbX BNILDI_01650 0.31 -0.2 325,041 - yhbX BNILDI_01650 0.33 +0.3 325,041 - yhbX BNILDI_01650 0.33 +0.3 325,072 + yhbX BNILDI_01650 0.35 -1.1 325,073 - yhbX BNILDI_01650 0.35 +1.1 325,094 + yhbX BNILDI_01650 0.36 -0.7 325,131 + yhbX BNILDI_01650 0.38 -0.0 325,166 - yhbX BNILDI_01650 0.40 -0.0 325,175 - yhbX BNILDI_01650 0.41 -0.7 325,235 - yhbX BNILDI_01650 0.45 -0.7 325,244 - yhbX BNILDI_01650 0.45 +0.0 325,260 + yhbX BNILDI_01650 0.46 +0.5 325,264 + yhbX BNILDI_01650 0.46 +0.8 325,326 + yhbX BNILDI_01650 0.50 +0.4 325,351 + yhbX BNILDI_01650 0.52 +0.8 325,351 + yhbX BNILDI_01650 0.52 -0.4 325,351 + yhbX BNILDI_01650 0.52 -0.5 325,406 - yhbX BNILDI_01650 0.55 +0.7 325,407 + yhbX BNILDI_01650 0.55 -1.8 325,413 + yhbX BNILDI_01650 0.56 -1.1 325,436 + yhbX BNILDI_01650 0.57 +1.0 325,462 - yhbX BNILDI_01650 0.59 +0.5
Or see this region's nucleotide sequence