Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yhbO and BNILDI_01535 are separated by 153 nucleotides BNILDI_01535 and yhbQ are separated by 50 nucleotides yhbQ and yhbS overlap by 14 nucleotides yhbS and ubiT overlap by 7 nucleotides ubiT and ubiU are separated by 208 nucleotides
BNILDI_01530: yhbO - protein/nucleic acid deglycase, at 302,091 to 302,609
yhbO
BNILDI_01535: BNILDI_01535 - UPF0306 protein, at 302,763 to 303,032
_01535
BNILDI_01540: yhbQ - DNA damage response exodeoxyribonuclease YhbQ, at 303,083 to 303,385
yhbQ
BNILDI_01545: yhbS - Uncharacterized N-acetyltransferase YhbS, at 303,372 to 303,875
yhbS
BNILDI_01550: ubiT - Ubiquinone biosynthesis accessory factor UbiT, at 303,869 to 304,393
ubiT
BNILDI_01555: ubiU - Ubiquinone biosynthesis protein UbiU, at 304,602 to 305,597
ubiU
Position (kb) 303
304 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 302.732 kb on - strand at 302.786 kb on + strand at 302.806 kb on - strand, within BNILDI_01535 at 302.902 kb on + strand, within BNILDI_01535 at 303.047 kb on - strand at 303.047 kb on - strand at 303.048 kb on + strand at 303.048 kb on + strand at 303.048 kb on + strand at 303.049 kb on - strand at 303.065 kb on + strand at 303.102 kb on - strand at 303.131 kb on + strand, within yhbQ at 303.132 kb on - strand, within yhbQ at 303.132 kb on - strand, within yhbQ at 303.133 kb on + strand, within yhbQ at 303.526 kb on + strand, within yhbS at 303.596 kb on - strand, within yhbS at 303.628 kb on + strand, within yhbS at 303.628 kb on + strand, within yhbS at 303.710 kb on - strand, within yhbS at 303.822 kb on + strand, within yhbS at 303.822 kb on + strand, within yhbS at 303.822 kb on + strand, within yhbS at 303.822 kb on + strand, within yhbS at 303.822 kb on + strand, within yhbS at 303.823 kb on - strand, within yhbS at 303.870 kb on + strand at 303.870 kb on + strand at 303.870 kb on + strand at 303.871 kb on - strand at 304.124 kb on - strand, within ubiT at 304.124 kb on - strand, within ubiT at 304.216 kb on + strand, within ubiT at 304.216 kb on + strand, within ubiT at 304.217 kb on - strand, within ubiT at 304.283 kb on + strand, within ubiT at 304.283 kb on + strand, within ubiT at 304.284 kb on - strand, within ubiT at 304.451 kb on - strand at 304.458 kb on + strand at 304.459 kb on - strand at 304.459 kb on - strand at 304.488 kb on + strand at 304.506 kb on - strand at 304.514 kb on + strand at 304.514 kb on + strand at 304.545 kb on - strand at 304.674 kb on + strand at 304.675 kb on - strand at 304.684 kb on + strand at 304.694 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 302,732 - +0.4 302,786 + +0.3 302,806 - BNILDI_01535 0.16 -0.6 302,902 + BNILDI_01535 0.51 -0.3 303,047 - +0.7 303,047 - -0.1 303,048 + -0.3 303,048 + -0.0 303,048 + -1.9 303,049 - -0.2 303,065 + -0.2 303,102 - +0.5 303,131 + yhbQ BNILDI_01540 0.16 -0.1 303,132 - yhbQ BNILDI_01540 0.16 +0.1 303,132 - yhbQ BNILDI_01540 0.16 -0.7 303,133 + yhbQ BNILDI_01540 0.17 -0.3 303,526 + yhbS BNILDI_01545 0.31 +1.1 303,596 - yhbS BNILDI_01545 0.44 -0.6 303,628 + yhbS BNILDI_01545 0.51 +0.1 303,628 + yhbS BNILDI_01545 0.51 -0.3 303,710 - yhbS BNILDI_01545 0.67 +1.7 303,822 + yhbS BNILDI_01545 0.89 -2.5 303,822 + yhbS BNILDI_01545 0.89 -0.5 303,822 + yhbS BNILDI_01545 0.89 +1.0 303,822 + yhbS BNILDI_01545 0.89 -0.0 303,822 + yhbS BNILDI_01545 0.89 -0.9 303,823 - yhbS BNILDI_01545 0.89 +0.2 303,870 + -0.2 303,870 + -0.6 303,870 + -0.5 303,871 - +0.4 304,124 - ubiT BNILDI_01550 0.49 +0.7 304,124 - ubiT BNILDI_01550 0.49 +0.9 304,216 + ubiT BNILDI_01550 0.66 +0.5 304,216 + ubiT BNILDI_01550 0.66 +0.0 304,217 - ubiT BNILDI_01550 0.66 -0.1 304,283 + ubiT BNILDI_01550 0.79 -0.1 304,283 + ubiT BNILDI_01550 0.79 -0.2 304,284 - ubiT BNILDI_01550 0.79 +0.4 304,451 - -0.7 304,458 + -2.2 304,459 - -1.7 304,459 - -0.5 304,488 + -1.3 304,506 - -3.9 304,514 + +1.4 304,514 + -0.2 304,545 - -1.7 304,674 + -0.7 304,675 - -0.2 304,684 + -0.0 304,694 + -1.2
Or see this region's nucleotide sequence