Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt garP and garD are separated by 374 nucleotides garD and prlF are separated by 148 nucleotides prlF and yhaV overlap by 1 nucleotides
BNILDI_01390: garP - galactarate/glucarate/glycerate transporter GarP, at 274,593 to 275,927
garP
BNILDI_01395: garD - galactarate dehydratase, at 276,302 to 277,873
garD
BNILDI_01400: prlF - type II toxin-antitoxin system antitoxin PrlF, at 278,022 to 278,357
prlF
BNILDI_01405: yhaV - type II toxin-antitoxin system ribonuclease toxin YhaV, at 278,357 to 278,821
yhaV
Position (kb) 276
277
278 Strain fitness (log2 ratio) -2
-1
0
1
2 at 275.306 kb on + strand, within garP at 275.306 kb on + strand, within garP at 275.307 kb on - strand, within garP at 275.456 kb on - strand, within garP at 275.468 kb on + strand, within garP at 275.469 kb on - strand, within garP at 275.568 kb on - strand, within garP at 275.615 kb on + strand, within garP at 275.663 kb on + strand, within garP at 275.666 kb on - strand, within garP at 275.669 kb on + strand, within garP at 275.669 kb on + strand, within garP at 275.694 kb on - strand, within garP at 275.758 kb on + strand, within garP at 275.813 kb on + strand at 276.025 kb on + strand at 276.029 kb on - strand at 276.029 kb on - strand at 276.029 kb on - strand at 276.030 kb on + strand at 276.046 kb on - strand at 276.145 kb on - strand at 276.576 kb on + strand, within garD at 276.577 kb on - strand, within garD at 276.577 kb on - strand, within garD at 276.577 kb on - strand, within garD at 276.577 kb on - strand, within garD at 276.752 kb on + strand, within garD at 276.752 kb on + strand, within garD at 276.756 kb on + strand, within garD at 276.757 kb on - strand, within garD at 276.831 kb on - strand, within garD at 276.881 kb on - strand, within garD at 276.881 kb on - strand, within garD at 276.892 kb on + strand, within garD at 276.893 kb on - strand, within garD at 276.924 kb on + strand, within garD at 276.924 kb on + strand, within garD at 276.925 kb on - strand, within garD at 276.997 kb on + strand, within garD at 276.997 kb on + strand, within garD at 277.005 kb on + strand, within garD at 277.214 kb on + strand, within garD at 277.228 kb on - strand, within garD at 277.364 kb on + strand, within garD at 277.365 kb on - strand, within garD at 277.701 kb on + strand, within garD at 277.702 kb on - strand, within garD at 277.909 kb on - strand at 277.950 kb on + strand at 277.981 kb on - strand at 278.006 kb on - strand at 278.031 kb on - strand at 278.213 kb on + strand, within prlF at 278.214 kb on - strand, within prlF at 278.214 kb on - strand, within prlF at 278.216 kb on + strand, within prlF at 278.216 kb on + strand, within prlF at 278.216 kb on + strand, within prlF at 278.217 kb on - strand, within prlF at 278.393 kb on + strand at 278.394 kb on - strand at 278.430 kb on + strand, within yhaV at 278.452 kb on - strand, within yhaV at 278.499 kb on + strand, within yhaV at 278.714 kb on + strand, within yhaV at 278.715 kb on - strand, within yhaV at 278.735 kb on + strand, within yhaV at 278.735 kb on + strand, within yhaV at 278.742 kb on + strand, within yhaV
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 275,306 + garP BNILDI_01390 0.53 +0.8 275,306 + garP BNILDI_01390 0.53 -0.4 275,307 - garP BNILDI_01390 0.53 +0.1 275,456 - garP BNILDI_01390 0.65 +0.1 275,468 + garP BNILDI_01390 0.66 -0.4 275,469 - garP BNILDI_01390 0.66 -0.1 275,568 - garP BNILDI_01390 0.73 +0.6 275,615 + garP BNILDI_01390 0.77 +0.5 275,663 + garP BNILDI_01390 0.80 -0.0 275,666 - garP BNILDI_01390 0.80 +0.1 275,669 + garP BNILDI_01390 0.81 -0.8 275,669 + garP BNILDI_01390 0.81 -0.1 275,694 - garP BNILDI_01390 0.82 +2.5 275,758 + garP BNILDI_01390 0.87 -0.8 275,813 + +0.4 276,025 + -0.3 276,029 - -0.4 276,029 - +0.1 276,029 - +0.2 276,030 + +0.5 276,046 - -0.0 276,145 - +1.1 276,576 + garD BNILDI_01395 0.17 +0.2 276,577 - garD BNILDI_01395 0.17 -0.4 276,577 - garD BNILDI_01395 0.17 -1.0 276,577 - garD BNILDI_01395 0.17 +2.0 276,577 - garD BNILDI_01395 0.17 -0.7 276,752 + garD BNILDI_01395 0.29 +0.6 276,752 + garD BNILDI_01395 0.29 +0.3 276,756 + garD BNILDI_01395 0.29 +0.6 276,757 - garD BNILDI_01395 0.29 -2.5 276,831 - garD BNILDI_01395 0.34 -1.9 276,881 - garD BNILDI_01395 0.37 +1.3 276,881 - garD BNILDI_01395 0.37 -0.8 276,892 + garD BNILDI_01395 0.38 -1.3 276,893 - garD BNILDI_01395 0.38 -0.3 276,924 + garD BNILDI_01395 0.40 +0.2 276,924 + garD BNILDI_01395 0.40 +0.2 276,925 - garD BNILDI_01395 0.40 -0.9 276,997 + garD BNILDI_01395 0.44 -0.2 276,997 + garD BNILDI_01395 0.44 -0.7 277,005 + garD BNILDI_01395 0.45 +0.8 277,214 + garD BNILDI_01395 0.58 -1.9 277,228 - garD BNILDI_01395 0.59 -1.0 277,364 + garD BNILDI_01395 0.68 +0.7 277,365 - garD BNILDI_01395 0.68 +1.9 277,701 + garD BNILDI_01395 0.89 -0.3 277,702 - garD BNILDI_01395 0.89 +1.3 277,909 - -0.7 277,950 + -2.2 277,981 - +0.1 278,006 - -1.0 278,031 - +0.1 278,213 + prlF BNILDI_01400 0.57 +0.5 278,214 - prlF BNILDI_01400 0.57 -0.4 278,214 - prlF BNILDI_01400 0.57 +1.3 278,216 + prlF BNILDI_01400 0.58 -2.1 278,216 + prlF BNILDI_01400 0.58 +0.4 278,216 + prlF BNILDI_01400 0.58 -2.2 278,217 - prlF BNILDI_01400 0.58 +1.8 278,393 + +0.1 278,394 - +0.5 278,430 + yhaV BNILDI_01405 0.16 +0.1 278,452 - yhaV BNILDI_01405 0.20 +0.5 278,499 + yhaV BNILDI_01405 0.31 -0.8 278,714 + yhaV BNILDI_01405 0.77 +0.8 278,715 - yhaV BNILDI_01405 0.77 -0.2 278,735 + yhaV BNILDI_01405 0.81 -0.1 278,735 + yhaV BNILDI_01405 0.81 -0.7 278,742 + yhaV BNILDI_01405 0.83 -0.9
Or see this region's nucleotide sequence