Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hldE and glnE are separated by 47 nucleotides glnE and ygiF are separated by 22 nucleotides
BNILDI_00995: hldE - bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE, at 188,980 to 190,413
hldE
BNILDI_01000: glnE - bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase, at 190,461 to 193,301
glnE
BNILDI_01005: ygiF - inorganic triphosphatase, at 193,324 to 194,625
ygiF
Position (kb) 190
191
192
193
194 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 190.453 kb on - strand at 190.453 kb on - strand at 190.453 kb on - strand at 190.458 kb on - strand at 190.589 kb on + strand at 190.591 kb on + strand at 190.592 kb on - strand at 190.592 kb on - strand at 190.592 kb on - strand at 190.592 kb on - strand at 190.629 kb on - strand at 190.648 kb on - strand at 190.730 kb on + strand at 190.791 kb on - strand, within glnE at 191.075 kb on + strand, within glnE at 191.081 kb on + strand, within glnE at 191.209 kb on + strand, within glnE at 191.210 kb on - strand, within glnE at 191.215 kb on - strand, within glnE at 191.215 kb on - strand, within glnE at 191.341 kb on - strand, within glnE at 191.364 kb on + strand, within glnE at 191.364 kb on + strand, within glnE at 191.365 kb on - strand, within glnE at 191.500 kb on + strand, within glnE at 191.667 kb on + strand, within glnE at 191.676 kb on + strand, within glnE at 191.677 kb on - strand, within glnE at 191.766 kb on + strand, within glnE at 191.766 kb on + strand, within glnE at 191.767 kb on - strand, within glnE at 191.820 kb on - strand, within glnE at 191.820 kb on - strand, within glnE at 191.859 kb on + strand, within glnE at 192.029 kb on + strand, within glnE at 192.029 kb on + strand, within glnE at 192.029 kb on + strand, within glnE at 192.030 kb on - strand, within glnE at 192.030 kb on - strand, within glnE at 192.030 kb on - strand, within glnE at 192.181 kb on + strand, within glnE at 192.357 kb on - strand, within glnE at 192.357 kb on - strand, within glnE at 192.442 kb on + strand, within glnE at 192.442 kb on + strand, within glnE at 192.443 kb on - strand, within glnE at 192.443 kb on - strand, within glnE at 192.443 kb on - strand, within glnE at 192.443 kb on - strand, within glnE at 192.490 kb on + strand, within glnE at 192.566 kb on - strand, within glnE at 192.568 kb on + strand, within glnE at 192.569 kb on - strand, within glnE at 192.569 kb on - strand, within glnE at 192.747 kb on - strand, within glnE at 192.783 kb on - strand, within glnE at 192.898 kb on + strand, within glnE at 192.898 kb on + strand, within glnE at 192.898 kb on + strand, within glnE at 193.010 kb on + strand, within glnE at 193.010 kb on + strand, within glnE at 193.068 kb on - strand at 193.187 kb on + strand at 193.271 kb on - strand at 193.311 kb on + strand at 193.469 kb on + strand, within ygiF at 193.470 kb on - strand, within ygiF at 193.470 kb on - strand, within ygiF at 193.470 kb on - strand, within ygiF at 193.489 kb on + strand, within ygiF at 193.501 kb on - strand, within ygiF at 193.648 kb on + strand, within ygiF at 193.716 kb on + strand, within ygiF at 193.913 kb on + strand, within ygiF at 193.913 kb on + strand, within ygiF at 193.914 kb on - strand, within ygiF at 194.160 kb on + strand, within ygiF at 194.278 kb on + strand, within ygiF
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 190,453 - -0.4 190,453 - +1.9 190,453 - -0.7 190,458 - +1.2 190,589 + +0.8 190,591 + -0.1 190,592 - -1.5 190,592 - -2.1 190,592 - -0.9 190,592 - -0.3 190,629 - -1.2 190,648 - +1.2 190,730 + -0.3 190,791 - glnE BNILDI_01000 0.12 +0.4 191,075 + glnE BNILDI_01000 0.22 -1.3 191,081 + glnE BNILDI_01000 0.22 -3.1 191,209 + glnE BNILDI_01000 0.26 +2.6 191,210 - glnE BNILDI_01000 0.26 -2.7 191,215 - glnE BNILDI_01000 0.27 +0.8 191,215 - glnE BNILDI_01000 0.27 +0.4 191,341 - glnE BNILDI_01000 0.31 -1.9 191,364 + glnE BNILDI_01000 0.32 +0.2 191,364 + glnE BNILDI_01000 0.32 -0.5 191,365 - glnE BNILDI_01000 0.32 -1.2 191,500 + glnE BNILDI_01000 0.37 -2.3 191,667 + glnE BNILDI_01000 0.42 -0.7 191,676 + glnE BNILDI_01000 0.43 +0.1 191,677 - glnE BNILDI_01000 0.43 +0.2 191,766 + glnE BNILDI_01000 0.46 +0.3 191,766 + glnE BNILDI_01000 0.46 -2.4 191,767 - glnE BNILDI_01000 0.46 +0.5 191,820 - glnE BNILDI_01000 0.48 +0.2 191,820 - glnE BNILDI_01000 0.48 +0.7 191,859 + glnE BNILDI_01000 0.49 -0.6 192,029 + glnE BNILDI_01000 0.55 +0.4 192,029 + glnE BNILDI_01000 0.55 +0.5 192,029 + glnE BNILDI_01000 0.55 -0.1 192,030 - glnE BNILDI_01000 0.55 -0.5 192,030 - glnE BNILDI_01000 0.55 -0.1 192,030 - glnE BNILDI_01000 0.55 -0.2 192,181 + glnE BNILDI_01000 0.61 -0.6 192,357 - glnE BNILDI_01000 0.67 -1.1 192,357 - glnE BNILDI_01000 0.67 +0.1 192,442 + glnE BNILDI_01000 0.70 +0.0 192,442 + glnE BNILDI_01000 0.70 -1.1 192,443 - glnE BNILDI_01000 0.70 -0.2 192,443 - glnE BNILDI_01000 0.70 -0.6 192,443 - glnE BNILDI_01000 0.70 -0.6 192,443 - glnE BNILDI_01000 0.70 +0.1 192,490 + glnE BNILDI_01000 0.71 +0.2 192,566 - glnE BNILDI_01000 0.74 -1.8 192,568 + glnE BNILDI_01000 0.74 -1.4 192,569 - glnE BNILDI_01000 0.74 -0.3 192,569 - glnE BNILDI_01000 0.74 -0.1 192,747 - glnE BNILDI_01000 0.80 +0.4 192,783 - glnE BNILDI_01000 0.82 -0.5 192,898 + glnE BNILDI_01000 0.86 -1.1 192,898 + glnE BNILDI_01000 0.86 -0.4 192,898 + glnE BNILDI_01000 0.86 -0.6 193,010 + glnE BNILDI_01000 0.90 -0.4 193,010 + glnE BNILDI_01000 0.90 -1.4 193,068 - +0.6 193,187 + -0.5 193,271 - -2.8 193,311 + +0.0 193,469 + ygiF BNILDI_01005 0.11 +0.5 193,470 - ygiF BNILDI_01005 0.11 -2.9 193,470 - ygiF BNILDI_01005 0.11 +0.4 193,470 - ygiF BNILDI_01005 0.11 -0.8 193,489 + ygiF BNILDI_01005 0.13 -0.7 193,501 - ygiF BNILDI_01005 0.14 +0.3 193,648 + ygiF BNILDI_01005 0.25 +1.9 193,716 + ygiF BNILDI_01005 0.30 -2.7 193,913 + ygiF BNILDI_01005 0.45 +0.7 193,913 + ygiF BNILDI_01005 0.45 -1.9 193,914 - ygiF BNILDI_01005 0.45 -1.2 194,160 + ygiF BNILDI_01005 0.64 -0.6 194,278 + ygiF BNILDI_01005 0.73 -0.4
Or see this region's nucleotide sequence