Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt kdpB and kdpC are separated by 8 nucleotides kdpC and kdpD overlap by 8 nucleotides kdpD and kdpE overlap by 4 nucleotides kdpE and speFL are separated by 274 nucleotides
NOLOHH_23445: kdpB - potassium-transporting ATPase subunit KdpB, at 4,613,938 to 4,615,986
kdpB
NOLOHH_23450: kdpC - K(+)-transporting ATPase subunit C, at 4,615,995 to 4,616,567
kdpC
NOLOHH_23455: kdpD - two-component system sensor histidine kinase KdpD, at 4,616,560 to 4,619,244
kdpD
NOLOHH_23460: kdpE - two-component system response regulator KdpE, at 4,619,241 to 4,619,918
kdpE
NOLOHH_23465: speFL - Leader peptide SpeFL, at 4,620,193 to 4,620,297
speFL
Position (kb) 4616
4617
4618
4619
4620 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4615.622 kb on + strand, within kdpB at 4615.622 kb on + strand, within kdpB at 4615.622 kb on + strand, within kdpB at 4615.622 kb on + strand, within kdpB at 4615.623 kb on - strand, within kdpB at 4615.623 kb on - strand, within kdpB at 4615.623 kb on - strand, within kdpB at 4615.626 kb on + strand, within kdpB at 4615.626 kb on + strand, within kdpB at 4615.627 kb on - strand, within kdpB at 4615.858 kb on + strand at 4615.861 kb on - strand at 4615.958 kb on + strand at 4616.005 kb on + strand at 4616.027 kb on + strand at 4616.027 kb on + strand at 4616.028 kb on - strand at 4616.028 kb on - strand at 4616.028 kb on - strand at 4616.135 kb on + strand, within kdpC at 4616.136 kb on - strand, within kdpC at 4616.136 kb on - strand, within kdpC at 4616.185 kb on - strand, within kdpC at 4616.223 kb on + strand, within kdpC at 4616.287 kb on + strand, within kdpC at 4616.288 kb on - strand, within kdpC at 4616.385 kb on - strand, within kdpC at 4616.388 kb on - strand, within kdpC at 4616.439 kb on - strand, within kdpC at 4616.502 kb on + strand, within kdpC at 4616.503 kb on - strand, within kdpC at 4616.576 kb on + strand at 4616.577 kb on - strand at 4616.760 kb on + strand at 4616.902 kb on - strand, within kdpD at 4616.902 kb on - strand, within kdpD at 4616.940 kb on + strand, within kdpD at 4616.977 kb on - strand, within kdpD at 4616.979 kb on + strand, within kdpD at 4617.149 kb on - strand, within kdpD at 4617.149 kb on - strand, within kdpD at 4617.149 kb on - strand, within kdpD at 4617.150 kb on + strand, within kdpD at 4617.323 kb on + strand, within kdpD at 4617.323 kb on + strand, within kdpD at 4617.324 kb on - strand, within kdpD at 4617.412 kb on + strand, within kdpD at 4617.412 kb on + strand, within kdpD at 4617.413 kb on - strand, within kdpD at 4617.476 kb on + strand, within kdpD at 4617.476 kb on + strand, within kdpD at 4617.543 kb on - strand, within kdpD at 4617.565 kb on - strand, within kdpD at 4617.800 kb on + strand, within kdpD at 4617.853 kb on + strand, within kdpD at 4617.853 kb on + strand, within kdpD at 4617.853 kb on + strand, within kdpD at 4617.853 kb on + strand, within kdpD at 4617.854 kb on - strand, within kdpD at 4617.988 kb on + strand, within kdpD at 4617.988 kb on + strand, within kdpD at 4618.041 kb on + strand, within kdpD at 4618.042 kb on - strand, within kdpD at 4618.103 kb on + strand, within kdpD at 4618.103 kb on + strand, within kdpD at 4618.103 kb on + strand, within kdpD at 4618.103 kb on + strand, within kdpD at 4618.103 kb on + strand, within kdpD at 4618.103 kb on + strand, within kdpD at 4618.103 kb on + strand, within kdpD at 4618.104 kb on - strand, within kdpD at 4618.104 kb on - strand, within kdpD at 4618.104 kb on - strand, within kdpD at 4618.104 kb on - strand, within kdpD at 4618.104 kb on - strand, within kdpD at 4618.104 kb on - strand, within kdpD at 4618.105 kb on + strand, within kdpD at 4618.174 kb on - strand, within kdpD at 4618.174 kb on - strand, within kdpD at 4618.227 kb on + strand, within kdpD at 4618.461 kb on + strand, within kdpD at 4618.461 kb on + strand, within kdpD at 4618.583 kb on + strand, within kdpD at 4618.584 kb on - strand, within kdpD at 4618.717 kb on - strand, within kdpD at 4618.721 kb on + strand, within kdpD at 4618.722 kb on - strand, within kdpD at 4618.790 kb on + strand, within kdpD at 4618.790 kb on + strand, within kdpD at 4619.046 kb on - strand at 4619.046 kb on - strand at 4619.052 kb on + strand at 4619.132 kb on + strand at 4619.132 kb on + strand at 4619.132 kb on + strand at 4619.132 kb on + strand at 4619.133 kb on - strand at 4619.238 kb on + strand at 4619.238 kb on + strand at 4619.238 kb on + strand at 4619.239 kb on - strand at 4619.325 kb on + strand, within kdpE at 4619.325 kb on + strand, within kdpE at 4619.326 kb on - strand, within kdpE at 4619.387 kb on + strand, within kdpE at 4619.541 kb on - strand, within kdpE at 4619.736 kb on - strand, within kdpE at 4619.767 kb on + strand, within kdpE at 4619.767 kb on + strand, within kdpE at 4619.819 kb on + strand, within kdpE at 4619.823 kb on + strand, within kdpE at 4619.824 kb on - strand, within kdpE at 4619.824 kb on - strand, within kdpE at 4619.963 kb on + strand at 4619.964 kb on - strand at 4619.998 kb on - strand at 4619.998 kb on - strand at 4620.089 kb on + strand at 4620.159 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 4,615,622 + kdpB NOLOHH_23445 0.82 +1.1 4,615,622 + kdpB NOLOHH_23445 0.82 -0.1 4,615,622 + kdpB NOLOHH_23445 0.82 +0.1 4,615,622 + kdpB NOLOHH_23445 0.82 -0.7 4,615,623 - kdpB NOLOHH_23445 0.82 +1.1 4,615,623 - kdpB NOLOHH_23445 0.82 +0.7 4,615,623 - kdpB NOLOHH_23445 0.82 +0.5 4,615,626 + kdpB NOLOHH_23445 0.82 -0.1 4,615,626 + kdpB NOLOHH_23445 0.82 +1.2 4,615,627 - kdpB NOLOHH_23445 0.82 +0.1 4,615,858 + -1.2 4,615,861 - -0.1 4,615,958 + +1.0 4,616,005 + +0.1 4,616,027 + +0.5 4,616,027 + -0.2 4,616,028 - -0.8 4,616,028 - +1.1 4,616,028 - -0.6 4,616,135 + kdpC NOLOHH_23450 0.24 -0.5 4,616,136 - kdpC NOLOHH_23450 0.25 -0.9 4,616,136 - kdpC NOLOHH_23450 0.25 +1.1 4,616,185 - kdpC NOLOHH_23450 0.33 -1.3 4,616,223 + kdpC NOLOHH_23450 0.40 -0.1 4,616,287 + kdpC NOLOHH_23450 0.51 +0.2 4,616,288 - kdpC NOLOHH_23450 0.51 +0.1 4,616,385 - kdpC NOLOHH_23450 0.68 +0.5 4,616,388 - kdpC NOLOHH_23450 0.69 +2.0 4,616,439 - kdpC NOLOHH_23450 0.77 -0.7 4,616,502 + kdpC NOLOHH_23450 0.88 -0.0 4,616,503 - kdpC NOLOHH_23450 0.89 +0.6 4,616,576 + +0.3 4,616,577 - -0.2 4,616,760 + -0.1 4,616,902 - kdpD NOLOHH_23455 0.13 +0.9 4,616,902 - kdpD NOLOHH_23455 0.13 -0.5 4,616,940 + kdpD NOLOHH_23455 0.14 +0.1 4,616,977 - kdpD NOLOHH_23455 0.16 +2.1 4,616,979 + kdpD NOLOHH_23455 0.16 +0.9 4,617,149 - kdpD NOLOHH_23455 0.22 +1.0 4,617,149 - kdpD NOLOHH_23455 0.22 +0.1 4,617,149 - kdpD NOLOHH_23455 0.22 +0.3 4,617,150 + kdpD NOLOHH_23455 0.22 +0.2 4,617,323 + kdpD NOLOHH_23455 0.28 -0.3 4,617,323 + kdpD NOLOHH_23455 0.28 -0.8 4,617,324 - kdpD NOLOHH_23455 0.28 +1.2 4,617,412 + kdpD NOLOHH_23455 0.32 +0.4 4,617,412 + kdpD NOLOHH_23455 0.32 +0.7 4,617,413 - kdpD NOLOHH_23455 0.32 -0.6 4,617,476 + kdpD NOLOHH_23455 0.34 -1.0 4,617,476 + kdpD NOLOHH_23455 0.34 -0.4 4,617,543 - kdpD NOLOHH_23455 0.37 +0.8 4,617,565 - kdpD NOLOHH_23455 0.37 +0.2 4,617,800 + kdpD NOLOHH_23455 0.46 +0.0 4,617,853 + kdpD NOLOHH_23455 0.48 +0.5 4,617,853 + kdpD NOLOHH_23455 0.48 -0.4 4,617,853 + kdpD NOLOHH_23455 0.48 -2.5 4,617,853 + kdpD NOLOHH_23455 0.48 +1.0 4,617,854 - kdpD NOLOHH_23455 0.48 +0.5 4,617,988 + kdpD NOLOHH_23455 0.53 +0.8 4,617,988 + kdpD NOLOHH_23455 0.53 +0.7 4,618,041 + kdpD NOLOHH_23455 0.55 +0.6 4,618,042 - kdpD NOLOHH_23455 0.55 +1.6 4,618,103 + kdpD NOLOHH_23455 0.57 +0.6 4,618,103 + kdpD NOLOHH_23455 0.57 -0.4 4,618,103 + kdpD NOLOHH_23455 0.57 +0.9 4,618,103 + kdpD NOLOHH_23455 0.57 -1.5 4,618,103 + kdpD NOLOHH_23455 0.57 +0.1 4,618,103 + kdpD NOLOHH_23455 0.57 +1.1 4,618,103 + kdpD NOLOHH_23455 0.57 -0.3 4,618,104 - kdpD NOLOHH_23455 0.58 +0.5 4,618,104 - kdpD NOLOHH_23455 0.58 +0.9 4,618,104 - kdpD NOLOHH_23455 0.58 +0.5 4,618,104 - kdpD NOLOHH_23455 0.58 -1.1 4,618,104 - kdpD NOLOHH_23455 0.58 -0.1 4,618,104 - kdpD NOLOHH_23455 0.58 +0.4 4,618,105 + kdpD NOLOHH_23455 0.58 +1.0 4,618,174 - kdpD NOLOHH_23455 0.60 +0.2 4,618,174 - kdpD NOLOHH_23455 0.60 -0.0 4,618,227 + kdpD NOLOHH_23455 0.62 +0.5 4,618,461 + kdpD NOLOHH_23455 0.71 +0.2 4,618,461 + kdpD NOLOHH_23455 0.71 -0.9 4,618,583 + kdpD NOLOHH_23455 0.75 +0.4 4,618,584 - kdpD NOLOHH_23455 0.75 +0.2 4,618,717 - kdpD NOLOHH_23455 0.80 +1.5 4,618,721 + kdpD NOLOHH_23455 0.80 +0.3 4,618,722 - kdpD NOLOHH_23455 0.81 -2.1 4,618,790 + kdpD NOLOHH_23455 0.83 +0.7 4,618,790 + kdpD NOLOHH_23455 0.83 +1.3 4,619,046 - +0.3 4,619,046 - +0.7 4,619,052 + +0.7 4,619,132 + +0.2 4,619,132 + +0.2 4,619,132 + -0.8 4,619,132 + -2.9 4,619,133 - +0.7 4,619,238 + +0.8 4,619,238 + -0.2 4,619,238 + +0.7 4,619,239 - +0.0 4,619,325 + kdpE NOLOHH_23460 0.12 -0.0 4,619,325 + kdpE NOLOHH_23460 0.12 -0.9 4,619,326 - kdpE NOLOHH_23460 0.13 -0.3 4,619,387 + kdpE NOLOHH_23460 0.22 -1.1 4,619,541 - kdpE NOLOHH_23460 0.44 +1.3 4,619,736 - kdpE NOLOHH_23460 0.73 -0.2 4,619,767 + kdpE NOLOHH_23460 0.78 -1.5 4,619,767 + kdpE NOLOHH_23460 0.78 +0.2 4,619,819 + kdpE NOLOHH_23460 0.85 -2.0 4,619,823 + kdpE NOLOHH_23460 0.86 -1.1 4,619,824 - kdpE NOLOHH_23460 0.86 -1.4 4,619,824 - kdpE NOLOHH_23460 0.86 -2.4 4,619,963 + -0.1 4,619,964 - -1.9 4,619,998 - +0.7 4,619,998 - -0.5 4,620,089 + -0.1 4,620,159 + -0.7
Or see this region's nucleotide sequence