Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dnaN and recF overlap by 1 nucleotides recF and gyrB_K447E are separated by 28 nucleotides
NOLOHH_07160: dnaN - DNA polymerase III subunit beta, at 1,357,432 to 1,358,532
dnaN
NOLOHH_07165: recF - DNA replication/repair protein RecF, at 1,358,532 to 1,359,605
recF
NOLOHH_07170: gyrB_K447E - DNA topoisomerase (ATP-hydrolyzing) subunit B GyrB, at 1,359,634 to 1,362,048
_K447E
Position (kb)
1358
1359
1360 Strain fitness (log2 ratio)
-2
-1
0
1 at 1358.530 kb on + strand at 1358.530 kb on + strand at 1358.530 kb on + strand at 1358.530 kb on + strand at 1358.531 kb on - strand at 1358.531 kb on - strand at 1358.531 kb on - strand at 1358.531 kb on - strand at 1358.531 kb on - strand at 1358.593 kb on + strand at 1358.593 kb on + strand at 1358.606 kb on + strand at 1358.607 kb on - strand at 1358.617 kb on + strand at 1358.617 kb on + strand at 1358.661 kb on + strand, within recF at 1358.661 kb on + strand, within recF at 1358.661 kb on + strand, within recF at 1358.661 kb on + strand, within recF at 1358.661 kb on + strand, within recF at 1358.662 kb on - strand, within recF at 1358.662 kb on - strand, within recF at 1358.662 kb on - strand, within recF at 1358.662 kb on - strand, within recF at 1358.662 kb on - strand, within recF at 1358.662 kb on - strand, within recF at 1358.662 kb on - strand, within recF at 1358.662 kb on - strand, within recF at 1358.662 kb on - strand, within recF at 1358.662 kb on - strand, within recF at 1358.663 kb on + strand, within recF at 1358.664 kb on - strand, within recF at 1358.664 kb on - strand, within recF at 1358.840 kb on + strand, within recF at 1358.840 kb on + strand, within recF at 1358.840 kb on + strand, within recF at 1358.841 kb on - strand, within recF at 1358.841 kb on - strand, within recF at 1358.897 kb on + strand, within recF at 1358.897 kb on + strand, within recF at 1358.898 kb on - strand, within recF at 1358.898 kb on - strand, within recF at 1358.898 kb on - strand, within recF at 1358.903 kb on - strand, within recF at 1358.922 kb on + strand, within recF at 1358.923 kb on - strand, within recF at 1359.114 kb on + strand, within recF at 1359.116 kb on + strand, within recF at 1359.153 kb on - strand, within recF at 1359.219 kb on + strand, within recF at 1359.219 kb on + strand, within recF at 1359.220 kb on - strand, within recF at 1359.220 kb on - strand, within recF at 1359.239 kb on + strand, within recF at 1359.239 kb on + strand, within recF at 1359.263 kb on - strand, within recF at 1359.263 kb on - strand, within recF at 1359.267 kb on + strand, within recF at 1359.267 kb on + strand, within recF at 1359.267 kb on + strand, within recF at 1359.268 kb on - strand, within recF at 1359.268 kb on - strand, within recF at 1359.268 kb on - strand, within recF at 1359.268 kb on - strand, within recF at 1359.287 kb on + strand, within recF at 1359.298 kb on + strand, within recF at 1359.298 kb on + strand, within recF at 1359.299 kb on - strand, within recF at 1359.299 kb on - strand, within recF at 1359.332 kb on + strand, within recF at 1359.332 kb on + strand, within recF at 1359.332 kb on + strand, within recF at 1359.332 kb on + strand, within recF at 1359.332 kb on + strand, within recF at 1359.333 kb on - strand, within recF at 1359.333 kb on - strand, within recF at 1359.333 kb on - strand, within recF at 1359.353 kb on + strand, within recF at 1359.353 kb on + strand, within recF at 1359.353 kb on + strand, within recF at 1359.354 kb on - strand, within recF at 1359.373 kb on + strand, within recF at 1359.427 kb on - strand, within recF at 1359.433 kb on + strand, within recF at 1359.433 kb on + strand, within recF at 1359.434 kb on - strand, within recF at 1359.490 kb on + strand, within recF at 1359.544 kb on + strand at 1359.544 kb on + strand at 1359.545 kb on - strand at 1359.545 kb on - strand at 1359.545 kb on - strand at 1359.545 kb on - strand at 1359.590 kb on + strand at 1359.612 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 1,358,530 + -0.3 1,358,530 + -2.0 1,358,530 + +0.2 1,358,530 + -0.2 1,358,531 - -0.5 1,358,531 - +0.5 1,358,531 - -1.7 1,358,531 - -0.5 1,358,531 - -0.1 1,358,593 + +0.3 1,358,593 + +0.3 1,358,606 + -0.4 1,358,607 - -0.5 1,358,617 + +0.2 1,358,617 + +0.5 1,358,661 + recF NOLOHH_07165 0.12 +0.7 1,358,661 + recF NOLOHH_07165 0.12 -0.1 1,358,661 + recF NOLOHH_07165 0.12 -0.6 1,358,661 + recF NOLOHH_07165 0.12 +0.4 1,358,661 + recF NOLOHH_07165 0.12 -0.1 1,358,662 - recF NOLOHH_07165 0.12 -0.1 1,358,662 - recF NOLOHH_07165 0.12 +0.0 1,358,662 - recF NOLOHH_07165 0.12 -0.7 1,358,662 - recF NOLOHH_07165 0.12 -0.7 1,358,662 - recF NOLOHH_07165 0.12 +0.4 1,358,662 - recF NOLOHH_07165 0.12 -1.0 1,358,662 - recF NOLOHH_07165 0.12 +0.6 1,358,662 - recF NOLOHH_07165 0.12 -0.2 1,358,662 - recF NOLOHH_07165 0.12 -0.1 1,358,662 - recF NOLOHH_07165 0.12 +1.1 1,358,663 + recF NOLOHH_07165 0.12 -0.6 1,358,664 - recF NOLOHH_07165 0.12 +0.7 1,358,664 - recF NOLOHH_07165 0.12 -0.6 1,358,840 + recF NOLOHH_07165 0.29 +0.6 1,358,840 + recF NOLOHH_07165 0.29 -0.9 1,358,840 + recF NOLOHH_07165 0.29 -0.0 1,358,841 - recF NOLOHH_07165 0.29 +0.6 1,358,841 - recF NOLOHH_07165 0.29 -0.2 1,358,897 + recF NOLOHH_07165 0.34 +0.1 1,358,897 + recF NOLOHH_07165 0.34 +0.5 1,358,898 - recF NOLOHH_07165 0.34 +0.2 1,358,898 - recF NOLOHH_07165 0.34 -1.1 1,358,898 - recF NOLOHH_07165 0.34 +0.4 1,358,903 - recF NOLOHH_07165 0.35 +0.3 1,358,922 + recF NOLOHH_07165 0.36 -0.9 1,358,923 - recF NOLOHH_07165 0.36 -0.1 1,359,114 + recF NOLOHH_07165 0.54 +0.1 1,359,116 + recF NOLOHH_07165 0.54 -0.3 1,359,153 - recF NOLOHH_07165 0.58 +0.6 1,359,219 + recF NOLOHH_07165 0.64 +0.9 1,359,219 + recF NOLOHH_07165 0.64 +0.7 1,359,220 - recF NOLOHH_07165 0.64 -1.5 1,359,220 - recF NOLOHH_07165 0.64 -0.6 1,359,239 + recF NOLOHH_07165 0.66 -1.1 1,359,239 + recF NOLOHH_07165 0.66 -0.1 1,359,263 - recF NOLOHH_07165 0.68 +0.7 1,359,263 - recF NOLOHH_07165 0.68 +0.9 1,359,267 + recF NOLOHH_07165 0.68 +0.6 1,359,267 + recF NOLOHH_07165 0.68 +0.9 1,359,267 + recF NOLOHH_07165 0.68 -0.4 1,359,268 - recF NOLOHH_07165 0.69 -0.3 1,359,268 - recF NOLOHH_07165 0.69 +0.2 1,359,268 - recF NOLOHH_07165 0.69 -1.3 1,359,268 - recF NOLOHH_07165 0.69 +1.3 1,359,287 + recF NOLOHH_07165 0.70 -0.7 1,359,298 + recF NOLOHH_07165 0.71 -0.9 1,359,298 + recF NOLOHH_07165 0.71 -1.0 1,359,299 - recF NOLOHH_07165 0.71 -1.4 1,359,299 - recF NOLOHH_07165 0.71 +0.4 1,359,332 + recF NOLOHH_07165 0.74 +0.4 1,359,332 + recF NOLOHH_07165 0.74 -0.0 1,359,332 + recF NOLOHH_07165 0.74 +0.8 1,359,332 + recF NOLOHH_07165 0.74 -0.1 1,359,332 + recF NOLOHH_07165 0.74 +0.2 1,359,333 - recF NOLOHH_07165 0.75 +0.2 1,359,333 - recF NOLOHH_07165 0.75 +0.8 1,359,333 - recF NOLOHH_07165 0.75 +0.4 1,359,353 + recF NOLOHH_07165 0.76 +0.7 1,359,353 + recF NOLOHH_07165 0.76 +0.8 1,359,353 + recF NOLOHH_07165 0.76 -0.7 1,359,354 - recF NOLOHH_07165 0.77 -0.3 1,359,373 + recF NOLOHH_07165 0.78 +1.1 1,359,427 - recF NOLOHH_07165 0.83 +0.6 1,359,433 + recF NOLOHH_07165 0.84 +0.0 1,359,433 + recF NOLOHH_07165 0.84 -0.0 1,359,434 - recF NOLOHH_07165 0.84 -0.4 1,359,490 + recF NOLOHH_07165 0.89 -0.2 1,359,544 + +0.8 1,359,544 + +0.6 1,359,545 - +0.5 1,359,545 - -1.7 1,359,545 - +1.7 1,359,545 - +0.1 1,359,590 + -0.9 1,359,612 + +1.6
Or see this region's nucleotide sequence