Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pgi and lysC are separated by 524 nucleotides lysC and NOLOHH_05345 are separated by 144 nucleotides
NOLOHH_05335: pgi - glucose-6-phosphate isomerase, at 982,964 to 984,613
pgi
NOLOHH_05340: lysC - lysine-sensitive aspartokinase 3, at 985,138 to 986,487
lysC
NOLOHH_05345: NOLOHH_05345 - zeta toxin, at 986,632 to 987,558
_05345
Position (kb) 985
986
987 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 984.165 kb on - strand, within pgi at 984.190 kb on - strand, within pgi at 984.211 kb on + strand, within pgi at 984.266 kb on + strand, within pgi at 984.266 kb on + strand, within pgi at 984.266 kb on + strand, within pgi at 984.267 kb on - strand, within pgi at 984.267 kb on - strand, within pgi at 984.267 kb on - strand, within pgi at 984.376 kb on + strand, within pgi at 984.376 kb on + strand, within pgi at 984.570 kb on - strand at 984.614 kb on + strand at 984.620 kb on + strand at 984.690 kb on + strand at 984.691 kb on - strand at 984.705 kb on - strand at 984.716 kb on + strand at 984.741 kb on + strand at 984.741 kb on + strand at 984.742 kb on - strand at 984.744 kb on + strand at 984.753 kb on + strand at 984.753 kb on + strand at 984.753 kb on + strand at 984.754 kb on - strand at 984.821 kb on + strand at 984.822 kb on - strand at 984.825 kb on + strand at 984.827 kb on + strand at 984.828 kb on - strand at 984.828 kb on - strand at 984.828 kb on - strand at 984.833 kb on + strand at 984.833 kb on + strand at 984.833 kb on + strand at 984.833 kb on + strand at 984.833 kb on + strand at 984.833 kb on + strand at 984.834 kb on - strand at 984.834 kb on - strand at 984.834 kb on - strand at 984.834 kb on - strand at 984.834 kb on - strand at 984.906 kb on + strand at 984.967 kb on - strand at 985.050 kb on + strand at 985.051 kb on - strand at 985.054 kb on - strand at 985.061 kb on + strand at 985.133 kb on + strand at 985.134 kb on - strand at 985.134 kb on - strand at 985.137 kb on + strand at 985.137 kb on + strand at 985.137 kb on + strand at 985.137 kb on + strand at 985.138 kb on - strand at 985.138 kb on - strand at 985.138 kb on - strand at 985.138 kb on - strand at 985.138 kb on - strand at 985.138 kb on - strand at 985.178 kb on + strand at 985.178 kb on + strand at 985.178 kb on + strand at 985.178 kb on + strand at 985.178 kb on + strand at 985.178 kb on + strand at 985.212 kb on + strand at 985.213 kb on - strand at 985.241 kb on + strand at 985.241 kb on + strand at 985.242 kb on - strand at 985.242 kb on - strand at 985.242 kb on - strand at 985.244 kb on + strand at 985.266 kb on + strand at 985.267 kb on - strand at 985.272 kb on + strand at 985.422 kb on + strand, within lysC at 985.423 kb on - strand, within lysC at 985.562 kb on + strand, within lysC at 985.562 kb on + strand, within lysC at 985.562 kb on + strand, within lysC at 985.562 kb on + strand, within lysC at 985.563 kb on - strand, within lysC at 985.563 kb on - strand, within lysC at 985.566 kb on + strand, within lysC at 985.566 kb on + strand, within lysC at 985.567 kb on - strand, within lysC at 985.567 kb on - strand, within lysC at 985.567 kb on - strand, within lysC at 985.578 kb on + strand, within lysC at 985.578 kb on + strand, within lysC at 985.613 kb on + strand, within lysC at 985.613 kb on + strand, within lysC at 985.671 kb on - strand, within lysC at 985.713 kb on + strand, within lysC at 985.713 kb on + strand, within lysC at 985.713 kb on + strand, within lysC at 985.714 kb on - strand, within lysC at 985.714 kb on - strand, within lysC at 985.714 kb on - strand, within lysC at 985.746 kb on + strand, within lysC at 985.747 kb on - strand, within lysC at 985.747 kb on - strand, within lysC at 985.816 kb on + strand, within lysC at 985.816 kb on + strand, within lysC at 985.816 kb on + strand, within lysC at 985.816 kb on + strand, within lysC at 985.816 kb on + strand, within lysC at 985.816 kb on + strand, within lysC at 985.817 kb on - strand, within lysC at 985.817 kb on - strand, within lysC at 985.817 kb on - strand, within lysC at 985.817 kb on - strand, within lysC at 985.817 kb on - strand, within lysC at 985.817 kb on - strand, within lysC at 985.835 kb on + strand, within lysC at 985.836 kb on - strand, within lysC at 986.011 kb on - strand, within lysC at 986.089 kb on - strand, within lysC at 986.089 kb on - strand, within lysC at 986.142 kb on + strand, within lysC at 986.142 kb on + strand, within lysC at 986.143 kb on - strand, within lysC at 986.145 kb on + strand, within lysC at 986.145 kb on + strand, within lysC at 986.146 kb on - strand, within lysC at 986.146 kb on - strand, within lysC at 986.159 kb on + strand, within lysC at 986.160 kb on - strand, within lysC at 986.160 kb on - strand, within lysC at 986.200 kb on - strand, within lysC at 986.488 kb on + strand at 986.488 kb on + strand at 986.488 kb on + strand at 986.489 kb on - strand at 986.504 kb on + strand at 986.504 kb on + strand at 986.525 kb on + strand at 986.525 kb on + strand at 986.556 kb on + strand at 986.584 kb on + strand at 986.595 kb on + strand at 986.597 kb on + strand at 986.598 kb on - strand at 986.701 kb on - strand at 986.709 kb on + strand at 986.841 kb on - strand, within NOLOHH_05345 at 986.874 kb on + strand, within NOLOHH_05345 at 986.874 kb on + strand, within NOLOHH_05345 at 986.874 kb on + strand, within NOLOHH_05345 at 986.889 kb on + strand, within NOLOHH_05345 at 986.992 kb on - strand, within NOLOHH_05345 at 987.037 kb on - strand, within NOLOHH_05345 at 987.037 kb on - strand, within NOLOHH_05345 at 987.037 kb on - strand, within NOLOHH_05345 at 987.071 kb on + strand, within NOLOHH_05345 at 987.090 kb on + strand, within NOLOHH_05345 at 987.095 kb on - strand, within NOLOHH_05345 at 987.126 kb on + strand, within NOLOHH_05345 at 987.234 kb on - strand, within NOLOHH_05345 at 987.243 kb on - strand, within NOLOHH_05345 at 987.266 kb on - strand, within NOLOHH_05345 at 987.284 kb on + strand, within NOLOHH_05345 at 987.284 kb on + strand, within NOLOHH_05345 at 987.331 kb on + strand, within NOLOHH_05345 at 987.333 kb on + strand, within NOLOHH_05345 at 987.334 kb on - strand, within NOLOHH_05345 at 987.334 kb on - strand, within NOLOHH_05345 at 987.334 kb on - strand, within NOLOHH_05345 at 987.336 kb on + strand, within NOLOHH_05345 at 987.337 kb on - strand, within NOLOHH_05345 at 987.358 kb on - strand, within NOLOHH_05345 at 987.482 kb on + strand at 987.482 kb on + strand at 987.483 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 984,165 - pgi NOLOHH_05335 0.73 +2.0 984,190 - pgi NOLOHH_05335 0.74 +0.6 984,211 + pgi NOLOHH_05335 0.76 -3.2 984,266 + pgi NOLOHH_05335 0.79 +0.9 984,266 + pgi NOLOHH_05335 0.79 +1.5 984,266 + pgi NOLOHH_05335 0.79 +1.3 984,267 - pgi NOLOHH_05335 0.79 -0.3 984,267 - pgi NOLOHH_05335 0.79 +0.4 984,267 - pgi NOLOHH_05335 0.79 -0.9 984,376 + pgi NOLOHH_05335 0.86 -0.1 984,376 + pgi NOLOHH_05335 0.86 -0.2 984,570 - -2.4 984,614 + +0.9 984,620 + -0.4 984,690 + -1.0 984,691 - -0.4 984,705 - -0.1 984,716 + +0.3 984,741 + +0.2 984,741 + +0.4 984,742 - -0.5 984,744 + +0.6 984,753 + +0.0 984,753 + -0.0 984,753 + +0.3 984,754 - +0.1 984,821 + +0.2 984,822 - +0.7 984,825 + -0.5 984,827 + +0.9 984,828 - +0.1 984,828 - +0.4 984,828 - -0.1 984,833 + +0.4 984,833 + -0.3 984,833 + +0.8 984,833 + -0.2 984,833 + -0.3 984,833 + -0.7 984,834 - +0.3 984,834 - +1.1 984,834 - +0.1 984,834 - +0.0 984,834 - +0.1 984,906 + +0.2 984,967 - +0.2 985,050 + -0.2 985,051 - +0.5 985,054 - +0.2 985,061 + +0.3 985,133 + -0.1 985,134 - +0.4 985,134 - -0.5 985,137 + +0.2 985,137 + -0.1 985,137 + +0.8 985,137 + -0.6 985,138 - +1.2 985,138 - +0.2 985,138 - +0.1 985,138 - +0.7 985,138 - +0.0 985,138 - +0.6 985,178 + +0.3 985,178 + +0.9 985,178 + +0.7 985,178 + +0.1 985,178 + +0.2 985,178 + -0.1 985,212 + +1.0 985,213 - +0.3 985,241 + -0.0 985,241 + +1.1 985,242 - -0.7 985,242 - +0.3 985,242 - +0.9 985,244 + +0.3 985,266 + +0.6 985,267 - +0.4 985,272 + +0.4 985,422 + lysC NOLOHH_05340 0.21 +0.0 985,423 - lysC NOLOHH_05340 0.21 +0.3 985,562 + lysC NOLOHH_05340 0.31 -0.8 985,562 + lysC NOLOHH_05340 0.31 +0.4 985,562 + lysC NOLOHH_05340 0.31 +1.4 985,562 + lysC NOLOHH_05340 0.31 -0.9 985,563 - lysC NOLOHH_05340 0.31 +1.0 985,563 - lysC NOLOHH_05340 0.31 +0.3 985,566 + lysC NOLOHH_05340 0.32 +0.7 985,566 + lysC NOLOHH_05340 0.32 +0.4 985,567 - lysC NOLOHH_05340 0.32 +0.9 985,567 - lysC NOLOHH_05340 0.32 +0.6 985,567 - lysC NOLOHH_05340 0.32 +0.2 985,578 + lysC NOLOHH_05340 0.33 +1.1 985,578 + lysC NOLOHH_05340 0.33 +0.1 985,613 + lysC NOLOHH_05340 0.35 +0.2 985,613 + lysC NOLOHH_05340 0.35 -0.3 985,671 - lysC NOLOHH_05340 0.39 +0.6 985,713 + lysC NOLOHH_05340 0.43 +0.1 985,713 + lysC NOLOHH_05340 0.43 +0.4 985,713 + lysC NOLOHH_05340 0.43 +0.3 985,714 - lysC NOLOHH_05340 0.43 -0.4 985,714 - lysC NOLOHH_05340 0.43 +0.2 985,714 - lysC NOLOHH_05340 0.43 +0.6 985,746 + lysC NOLOHH_05340 0.45 +0.7 985,747 - lysC NOLOHH_05340 0.45 +0.1 985,747 - lysC NOLOHH_05340 0.45 +0.1 985,816 + lysC NOLOHH_05340 0.50 +0.1 985,816 + lysC NOLOHH_05340 0.50 -0.3 985,816 + lysC NOLOHH_05340 0.50 -0.6 985,816 + lysC NOLOHH_05340 0.50 +0.8 985,816 + lysC NOLOHH_05340 0.50 +0.1 985,816 + lysC NOLOHH_05340 0.50 -1.2 985,817 - lysC NOLOHH_05340 0.50 +1.1 985,817 - lysC NOLOHH_05340 0.50 +0.6 985,817 - lysC NOLOHH_05340 0.50 +0.7 985,817 - lysC NOLOHH_05340 0.50 -0.2 985,817 - lysC NOLOHH_05340 0.50 -0.5 985,817 - lysC NOLOHH_05340 0.50 -0.1 985,835 + lysC NOLOHH_05340 0.52 +0.3 985,836 - lysC NOLOHH_05340 0.52 -1.1 986,011 - lysC NOLOHH_05340 0.65 +0.6 986,089 - lysC NOLOHH_05340 0.70 -3.1 986,089 - lysC NOLOHH_05340 0.70 +1.0 986,142 + lysC NOLOHH_05340 0.74 -0.1 986,142 + lysC NOLOHH_05340 0.74 -1.4 986,143 - lysC NOLOHH_05340 0.74 +0.7 986,145 + lysC NOLOHH_05340 0.75 +0.0 986,145 + lysC NOLOHH_05340 0.75 -1.5 986,146 - lysC NOLOHH_05340 0.75 +0.6 986,146 - lysC NOLOHH_05340 0.75 -0.1 986,159 + lysC NOLOHH_05340 0.76 -2.3 986,160 - lysC NOLOHH_05340 0.76 -0.5 986,160 - lysC NOLOHH_05340 0.76 +0.5 986,200 - lysC NOLOHH_05340 0.79 -0.0 986,488 + -1.6 986,488 + +0.5 986,488 + +0.2 986,489 - +0.4 986,504 + -0.1 986,504 + -0.1 986,525 + +0.5 986,525 + -0.2 986,556 + -0.5 986,584 + -0.3 986,595 + +0.2 986,597 + +0.2 986,598 - -1.7 986,701 - -0.2 986,709 + +0.1 986,841 - NOLOHH_05345 0.23 +0.1 986,874 + NOLOHH_05345 0.26 -2.7 986,874 + NOLOHH_05345 0.26 -0.1 986,874 + NOLOHH_05345 0.26 -0.4 986,889 + NOLOHH_05345 0.28 -0.4 986,992 - NOLOHH_05345 0.39 +0.2 987,037 - NOLOHH_05345 0.44 -0.4 987,037 - NOLOHH_05345 0.44 -0.6 987,037 - NOLOHH_05345 0.44 -0.3 987,071 + NOLOHH_05345 0.47 -0.3 987,090 + NOLOHH_05345 0.49 +0.4 987,095 - NOLOHH_05345 0.50 -0.5 987,126 + NOLOHH_05345 0.53 -0.1 987,234 - NOLOHH_05345 0.65 -0.8 987,243 - NOLOHH_05345 0.66 +0.1 987,266 - NOLOHH_05345 0.68 -0.8 987,284 + NOLOHH_05345 0.70 -0.2 987,284 + NOLOHH_05345 0.70 +0.7 987,331 + NOLOHH_05345 0.75 -1.1 987,333 + NOLOHH_05345 0.76 -1.0 987,334 - NOLOHH_05345 0.76 +0.7 987,334 - NOLOHH_05345 0.76 +0.5 987,334 - NOLOHH_05345 0.76 +0.3 987,336 + NOLOHH_05345 0.76 -0.5 987,337 - NOLOHH_05345 0.76 +0.6 987,358 - NOLOHH_05345 0.78 +1.0 987,482 + -0.4 987,482 + +0.0 987,483 - -0.5
Or see this region's nucleotide sequence