Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yaeF and NOLOHH_02430 are separated by 202 nucleotides NOLOHH_02430 and nlpE are separated by 249 nucleotides nlpE and arfB are separated by 13 nucleotides
NOLOHH_02425: yaeF - YaeF family permuted papain-like enzyme, at 392,153 to 392,977
yaeF
NOLOHH_02430: NOLOHH_02430 - IS110-like element IS621 family transposase, at 393,180 to 394,160
_02430
NOLOHH_02435: nlpE - envelope stress response activation lipoprotein NlpE, at 394,410 to 395,120
nlpE
NOLOHH_02440: arfB - aminoacyl-tRNA hydrolase, at 395,134 to 395,556
arfB
Position (kb) 393
394
395 Strain fitness (log2 ratio) -2
-1
0
1
2 at 392.216 kb on - strand at 392.256 kb on + strand, within yaeF at 392.441 kb on + strand, within yaeF at 392.442 kb on - strand, within yaeF at 392.455 kb on + strand, within yaeF at 392.456 kb on - strand, within yaeF at 392.519 kb on - strand, within yaeF at 392.519 kb on - strand, within yaeF at 392.525 kb on - strand, within yaeF at 392.538 kb on + strand, within yaeF at 392.614 kb on + strand, within yaeF at 392.614 kb on + strand, within yaeF at 392.615 kb on - strand, within yaeF at 392.615 kb on - strand, within yaeF at 392.615 kb on - strand, within yaeF at 392.615 kb on - strand, within yaeF at 392.615 kb on - strand, within yaeF at 392.615 kb on - strand, within yaeF at 392.618 kb on + strand, within yaeF at 392.734 kb on - strand, within yaeF at 392.734 kb on - strand, within yaeF at 392.818 kb on + strand, within yaeF at 392.863 kb on + strand, within yaeF at 392.863 kb on + strand, within yaeF at 392.863 kb on + strand, within yaeF at 392.863 kb on + strand, within yaeF at 392.864 kb on - strand, within yaeF at 392.864 kb on - strand, within yaeF at 392.864 kb on - strand, within yaeF at 392.864 kb on - strand, within yaeF at 392.907 kb on + strand at 392.907 kb on + strand at 392.907 kb on + strand at 392.907 kb on + strand at 392.908 kb on - strand at 392.908 kb on - strand at 392.908 kb on - strand at 392.912 kb on + strand at 392.913 kb on - strand at 392.939 kb on + strand at 392.939 kb on + strand at 394.348 kb on + strand at 394.348 kb on + strand at 394.348 kb on + strand at 394.348 kb on + strand at 394.348 kb on + strand at 394.348 kb on + strand at 394.348 kb on + strand at 394.348 kb on + strand at 394.348 kb on + strand at 394.425 kb on - strand at 394.470 kb on + strand at 394.473 kb on + strand at 394.473 kb on + strand at 394.473 kb on + strand at 394.474 kb on - strand at 394.514 kb on + strand, within nlpE at 394.515 kb on - strand, within nlpE at 394.515 kb on - strand, within nlpE at 394.527 kb on + strand, within nlpE at 394.527 kb on + strand, within nlpE at 394.528 kb on - strand, within nlpE at 394.528 kb on - strand, within nlpE at 394.537 kb on - strand, within nlpE at 394.573 kb on + strand, within nlpE at 394.574 kb on - strand, within nlpE at 394.574 kb on - strand, within nlpE at 394.578 kb on - strand, within nlpE at 394.655 kb on + strand, within nlpE at 394.656 kb on - strand, within nlpE at 394.657 kb on + strand, within nlpE at 394.658 kb on - strand, within nlpE at 394.658 kb on - strand, within nlpE at 394.658 kb on - strand, within nlpE at 394.658 kb on - strand, within nlpE at 394.663 kb on + strand, within nlpE at 394.664 kb on - strand, within nlpE at 394.664 kb on - strand, within nlpE at 394.664 kb on - strand, within nlpE at 394.664 kb on - strand, within nlpE at 394.664 kb on - strand, within nlpE at 394.664 kb on - strand, within nlpE at 394.664 kb on - strand, within nlpE at 394.664 kb on - strand, within nlpE at 394.691 kb on + strand, within nlpE at 394.692 kb on - strand, within nlpE at 394.692 kb on - strand, within nlpE at 394.695 kb on + strand, within nlpE at 394.696 kb on - strand, within nlpE at 394.696 kb on - strand, within nlpE at 394.700 kb on + strand, within nlpE at 394.700 kb on + strand, within nlpE at 394.701 kb on - strand, within nlpE at 394.701 kb on - strand, within nlpE at 394.701 kb on - strand, within nlpE at 394.701 kb on - strand, within nlpE at 394.721 kb on + strand, within nlpE at 394.722 kb on - strand, within nlpE at 394.724 kb on - strand, within nlpE at 394.795 kb on + strand, within nlpE at 394.795 kb on + strand, within nlpE at 394.796 kb on - strand, within nlpE at 394.796 kb on - strand, within nlpE at 394.824 kb on + strand, within nlpE at 394.825 kb on - strand, within nlpE at 394.897 kb on + strand, within nlpE at 395.057 kb on + strand at 395.057 kb on + strand at 395.057 kb on + strand at 395.058 kb on - strand at 395.058 kb on - strand at 395.058 kb on - strand at 395.058 kb on - strand at 395.058 kb on - strand at 395.058 kb on - strand at 395.058 kb on - strand at 395.058 kb on - strand at 395.058 kb on - strand at 395.086 kb on - strand at 395.122 kb on + strand at 395.123 kb on - strand at 395.123 kb on - strand at 395.152 kb on + strand at 395.153 kb on - strand at 395.153 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 392,216 - -2.0 392,256 + yaeF NOLOHH_02425 0.12 -0.2 392,441 + yaeF NOLOHH_02425 0.35 -1.0 392,442 - yaeF NOLOHH_02425 0.35 +1.1 392,455 + yaeF NOLOHH_02425 0.37 +0.9 392,456 - yaeF NOLOHH_02425 0.37 -0.4 392,519 - yaeF NOLOHH_02425 0.44 -0.4 392,519 - yaeF NOLOHH_02425 0.44 +0.5 392,525 - yaeF NOLOHH_02425 0.45 +1.0 392,538 + yaeF NOLOHH_02425 0.47 -0.2 392,614 + yaeF NOLOHH_02425 0.56 -1.2 392,614 + yaeF NOLOHH_02425 0.56 +0.4 392,615 - yaeF NOLOHH_02425 0.56 +0.7 392,615 - yaeF NOLOHH_02425 0.56 -1.9 392,615 - yaeF NOLOHH_02425 0.56 +0.1 392,615 - yaeF NOLOHH_02425 0.56 -1.3 392,615 - yaeF NOLOHH_02425 0.56 -0.5 392,615 - yaeF NOLOHH_02425 0.56 +1.1 392,618 + yaeF NOLOHH_02425 0.56 +0.3 392,734 - yaeF NOLOHH_02425 0.70 -1.3 392,734 - yaeF NOLOHH_02425 0.70 -0.2 392,818 + yaeF NOLOHH_02425 0.81 -1.4 392,863 + yaeF NOLOHH_02425 0.86 +0.4 392,863 + yaeF NOLOHH_02425 0.86 -0.4 392,863 + yaeF NOLOHH_02425 0.86 +1.3 392,863 + yaeF NOLOHH_02425 0.86 -0.4 392,864 - yaeF NOLOHH_02425 0.86 +0.4 392,864 - yaeF NOLOHH_02425 0.86 +0.4 392,864 - yaeF NOLOHH_02425 0.86 +0.4 392,864 - yaeF NOLOHH_02425 0.86 +1.0 392,907 + +0.2 392,907 + -0.5 392,907 + +1.1 392,907 + -0.4 392,908 - +0.0 392,908 - +0.7 392,908 - +0.6 392,912 + -0.5 392,913 - -0.2 392,939 + +0.7 392,939 + +0.7 394,348 + +0.8 394,348 + +0.5 394,348 + -0.2 394,348 + +0.8 394,348 + +1.0 394,348 + +0.8 394,348 + -1.7 394,348 + +0.2 394,348 + -0.9 394,425 - +0.0 394,470 + -0.3 394,473 + +1.3 394,473 + +0.9 394,473 + +0.4 394,474 - +0.6 394,514 + nlpE NOLOHH_02435 0.15 -0.9 394,515 - nlpE NOLOHH_02435 0.15 +0.5 394,515 - nlpE NOLOHH_02435 0.15 +0.6 394,527 + nlpE NOLOHH_02435 0.16 -0.1 394,527 + nlpE NOLOHH_02435 0.16 +0.6 394,528 - nlpE NOLOHH_02435 0.17 +0.5 394,528 - nlpE NOLOHH_02435 0.17 +0.7 394,537 - nlpE NOLOHH_02435 0.18 +0.6 394,573 + nlpE NOLOHH_02435 0.23 -0.4 394,574 - nlpE NOLOHH_02435 0.23 +0.4 394,574 - nlpE NOLOHH_02435 0.23 -0.2 394,578 - nlpE NOLOHH_02435 0.24 +0.5 394,655 + nlpE NOLOHH_02435 0.34 -0.3 394,656 - nlpE NOLOHH_02435 0.35 +0.5 394,657 + nlpE NOLOHH_02435 0.35 +0.3 394,658 - nlpE NOLOHH_02435 0.35 -0.3 394,658 - nlpE NOLOHH_02435 0.35 +0.9 394,658 - nlpE NOLOHH_02435 0.35 -0.1 394,658 - nlpE NOLOHH_02435 0.35 +0.6 394,663 + nlpE NOLOHH_02435 0.36 -0.2 394,664 - nlpE NOLOHH_02435 0.36 -0.0 394,664 - nlpE NOLOHH_02435 0.36 -1.0 394,664 - nlpE NOLOHH_02435 0.36 -0.5 394,664 - nlpE NOLOHH_02435 0.36 +0.2 394,664 - nlpE NOLOHH_02435 0.36 +0.3 394,664 - nlpE NOLOHH_02435 0.36 +1.3 394,664 - nlpE NOLOHH_02435 0.36 +0.4 394,664 - nlpE NOLOHH_02435 0.36 +0.5 394,691 + nlpE NOLOHH_02435 0.40 +0.3 394,692 - nlpE NOLOHH_02435 0.40 +0.2 394,692 - nlpE NOLOHH_02435 0.40 +0.9 394,695 + nlpE NOLOHH_02435 0.40 +0.2 394,696 - nlpE NOLOHH_02435 0.40 -0.7 394,696 - nlpE NOLOHH_02435 0.40 +0.6 394,700 + nlpE NOLOHH_02435 0.41 +0.4 394,700 + nlpE NOLOHH_02435 0.41 -0.0 394,701 - nlpE NOLOHH_02435 0.41 -0.2 394,701 - nlpE NOLOHH_02435 0.41 +0.2 394,701 - nlpE NOLOHH_02435 0.41 +0.1 394,701 - nlpE NOLOHH_02435 0.41 -2.1 394,721 + nlpE NOLOHH_02435 0.44 +0.3 394,722 - nlpE NOLOHH_02435 0.44 +0.1 394,724 - nlpE NOLOHH_02435 0.44 -0.1 394,795 + nlpE NOLOHH_02435 0.54 -0.5 394,795 + nlpE NOLOHH_02435 0.54 +1.6 394,796 - nlpE NOLOHH_02435 0.54 +0.0 394,796 - nlpE NOLOHH_02435 0.54 -0.4 394,824 + nlpE NOLOHH_02435 0.58 -1.0 394,825 - nlpE NOLOHH_02435 0.58 -1.4 394,897 + nlpE NOLOHH_02435 0.68 +1.6 395,057 + -1.4 395,057 + -0.4 395,057 + +0.9 395,058 - +0.3 395,058 - -0.7 395,058 - +1.7 395,058 - +2.0 395,058 - -0.7 395,058 - +0.4 395,058 - -0.9 395,058 - +1.6 395,058 - +0.3 395,086 - -0.1 395,122 + -0.1 395,123 - +0.4 395,123 - +0.2 395,152 + +1.9 395,153 - +0.0 395,153 - -0.1
Or see this region's nucleotide sequence