Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt allS and mnmH are separated by 68 nucleotides mnmH and NOLOHH_00930 are separated by 115 nucleotides
NOLOHH_00920: allS - HTH-type transcriptional activator AllS, at 70,733 to 71,659
allS
NOLOHH_00925: mnmH - tRNA 2-selenouridine(34) synthase MnmH, at 71,728 to 72,822
mnmH
NOLOHH_00930: NOLOHH_00930 - Transposase (Identified by ISEscan HMM), at 72,938 to 73,336
_00930
Position (kb) 71
72
73 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 70.809 kb on + strand at 70.810 kb on - strand at 70.813 kb on + strand at 70.813 kb on + strand at 70.870 kb on - strand, within allS at 70.926 kb on + strand, within allS at 70.927 kb on - strand, within allS at 70.927 kb on - strand, within allS at 70.966 kb on + strand, within allS at 71.039 kb on + strand, within allS at 71.039 kb on + strand, within allS at 71.123 kb on + strand, within allS at 71.123 kb on + strand, within allS at 71.123 kb on + strand, within allS at 71.123 kb on + strand, within allS at 71.123 kb on + strand, within allS at 71.124 kb on - strand, within allS at 71.124 kb on - strand, within allS at 71.148 kb on + strand, within allS at 71.149 kb on - strand, within allS at 71.149 kb on - strand, within allS at 71.149 kb on - strand, within allS at 71.150 kb on + strand, within allS at 71.150 kb on + strand, within allS at 71.151 kb on - strand, within allS at 71.151 kb on - strand, within allS at 71.151 kb on - strand, within allS at 71.151 kb on - strand, within allS at 71.203 kb on + strand, within allS at 71.203 kb on + strand, within allS at 71.204 kb on - strand, within allS at 71.204 kb on - strand, within allS at 71.210 kb on - strand, within allS at 71.393 kb on - strand, within allS at 71.496 kb on + strand, within allS at 71.496 kb on + strand, within allS at 71.497 kb on - strand, within allS at 71.584 kb on + strand at 71.584 kb on + strand at 71.584 kb on + strand at 71.657 kb on + strand at 71.657 kb on + strand at 71.727 kb on + strand at 71.755 kb on + strand at 71.755 kb on + strand at 71.779 kb on - strand at 71.890 kb on + strand, within mnmH at 71.964 kb on + strand, within mnmH at 71.965 kb on - strand, within mnmH at 71.967 kb on - strand, within mnmH at 71.967 kb on - strand, within mnmH at 72.006 kb on + strand, within mnmH at 72.006 kb on + strand, within mnmH at 72.006 kb on + strand, within mnmH at 72.006 kb on + strand, within mnmH at 72.007 kb on - strand, within mnmH at 72.007 kb on - strand, within mnmH at 72.042 kb on + strand, within mnmH at 72.042 kb on + strand, within mnmH at 72.042 kb on + strand, within mnmH at 72.043 kb on - strand, within mnmH at 72.043 kb on - strand, within mnmH at 72.043 kb on - strand, within mnmH at 72.043 kb on - strand, within mnmH at 72.043 kb on - strand, within mnmH at 72.100 kb on + strand, within mnmH at 72.101 kb on - strand, within mnmH at 72.102 kb on + strand, within mnmH at 72.102 kb on + strand, within mnmH at 72.158 kb on + strand, within mnmH at 72.177 kb on + strand, within mnmH at 72.200 kb on + strand, within mnmH at 72.275 kb on + strand, within mnmH at 72.329 kb on + strand, within mnmH at 72.453 kb on - strand, within mnmH at 72.532 kb on + strand, within mnmH at 72.568 kb on + strand, within mnmH at 72.611 kb on + strand, within mnmH at 72.711 kb on - strand, within mnmH at 72.722 kb on - strand at 72.737 kb on - strand at 72.737 kb on - strand at 72.832 kb on + strand at 72.832 kb on + strand at 72.832 kb on + strand at 72.832 kb on + strand at 72.833 kb on - strand at 72.833 kb on - strand at 72.838 kb on + strand at 72.947 kb on - strand at 73.049 kb on - strand, within NOLOHH_00930 at 73.129 kb on + strand, within NOLOHH_00930 at 73.173 kb on - strand, within NOLOHH_00930 at 73.239 kb on + strand, within NOLOHH_00930 at 73.318 kb on - strand at 73.334 kb on + strand at 73.344 kb on + strand at 73.345 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 70,809 + +0.1 70,810 - +0.8 70,813 + +1.3 70,813 + -1.4 70,870 - allS NOLOHH_00920 0.15 +0.5 70,926 + allS NOLOHH_00920 0.21 +0.6 70,927 - allS NOLOHH_00920 0.21 +0.1 70,927 - allS NOLOHH_00920 0.21 +0.8 70,966 + allS NOLOHH_00920 0.25 -0.4 71,039 + allS NOLOHH_00920 0.33 -0.2 71,039 + allS NOLOHH_00920 0.33 -1.2 71,123 + allS NOLOHH_00920 0.42 -0.3 71,123 + allS NOLOHH_00920 0.42 -0.4 71,123 + allS NOLOHH_00920 0.42 -0.4 71,123 + allS NOLOHH_00920 0.42 +0.5 71,123 + allS NOLOHH_00920 0.42 -0.3 71,124 - allS NOLOHH_00920 0.42 +0.9 71,124 - allS NOLOHH_00920 0.42 +0.6 71,148 + allS NOLOHH_00920 0.45 +0.4 71,149 - allS NOLOHH_00920 0.45 -0.9 71,149 - allS NOLOHH_00920 0.45 +1.0 71,149 - allS NOLOHH_00920 0.45 -0.0 71,150 + allS NOLOHH_00920 0.45 +0.6 71,150 + allS NOLOHH_00920 0.45 -1.4 71,151 - allS NOLOHH_00920 0.45 +0.5 71,151 - allS NOLOHH_00920 0.45 +0.1 71,151 - allS NOLOHH_00920 0.45 -0.2 71,151 - allS NOLOHH_00920 0.45 -0.4 71,203 + allS NOLOHH_00920 0.51 +0.4 71,203 + allS NOLOHH_00920 0.51 -1.2 71,204 - allS NOLOHH_00920 0.51 +0.1 71,204 - allS NOLOHH_00920 0.51 +1.8 71,210 - allS NOLOHH_00920 0.51 +0.5 71,393 - allS NOLOHH_00920 0.71 -1.1 71,496 + allS NOLOHH_00920 0.82 +0.1 71,496 + allS NOLOHH_00920 0.82 -0.8 71,497 - allS NOLOHH_00920 0.82 -0.2 71,584 + +0.4 71,584 + -0.4 71,584 + -2.5 71,657 + +0.3 71,657 + -0.3 71,727 + +0.2 71,755 + +0.1 71,755 + +0.8 71,779 - +0.8 71,890 + mnmH NOLOHH_00925 0.15 -0.5 71,964 + mnmH NOLOHH_00925 0.22 -0.5 71,965 - mnmH NOLOHH_00925 0.22 -0.0 71,967 - mnmH NOLOHH_00925 0.22 +0.3 71,967 - mnmH NOLOHH_00925 0.22 -0.0 72,006 + mnmH NOLOHH_00925 0.25 +0.7 72,006 + mnmH NOLOHH_00925 0.25 +0.5 72,006 + mnmH NOLOHH_00925 0.25 -1.1 72,006 + mnmH NOLOHH_00925 0.25 +0.5 72,007 - mnmH NOLOHH_00925 0.25 +1.3 72,007 - mnmH NOLOHH_00925 0.25 +1.2 72,042 + mnmH NOLOHH_00925 0.29 +0.6 72,042 + mnmH NOLOHH_00925 0.29 +0.3 72,042 + mnmH NOLOHH_00925 0.29 +0.2 72,043 - mnmH NOLOHH_00925 0.29 -0.1 72,043 - mnmH NOLOHH_00925 0.29 -0.0 72,043 - mnmH NOLOHH_00925 0.29 +0.7 72,043 - mnmH NOLOHH_00925 0.29 +0.2 72,043 - mnmH NOLOHH_00925 0.29 -3.1 72,100 + mnmH NOLOHH_00925 0.34 +0.6 72,101 - mnmH NOLOHH_00925 0.34 +0.5 72,102 + mnmH NOLOHH_00925 0.34 -0.2 72,102 + mnmH NOLOHH_00925 0.34 +1.4 72,158 + mnmH NOLOHH_00925 0.39 -0.7 72,177 + mnmH NOLOHH_00925 0.41 -0.2 72,200 + mnmH NOLOHH_00925 0.43 +0.6 72,275 + mnmH NOLOHH_00925 0.50 +0.5 72,329 + mnmH NOLOHH_00925 0.55 -0.7 72,453 - mnmH NOLOHH_00925 0.66 +1.3 72,532 + mnmH NOLOHH_00925 0.73 +1.0 72,568 + mnmH NOLOHH_00925 0.77 -0.6 72,611 + mnmH NOLOHH_00925 0.81 -0.5 72,711 - mnmH NOLOHH_00925 0.90 +0.1 72,722 - -0.0 72,737 - +0.6 72,737 - +1.7 72,832 + -1.5 72,832 + +0.1 72,832 + +0.3 72,832 + +0.3 72,833 - -0.3 72,833 - -1.6 72,838 + -1.3 72,947 - -1.5 73,049 - NOLOHH_00930 0.28 +0.3 73,129 + NOLOHH_00930 0.48 -0.6 73,173 - NOLOHH_00930 0.59 +0.1 73,239 + NOLOHH_00930 0.75 +0.2 73,318 - -0.2 73,334 + +0.2 73,344 + +0.3 73,345 - -0.1
Or see this region's nucleotide sequence