Strain Fitness in Escherichia coli ECOR27 around NOLOHH_00300

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntvirB11 and NOLOHH_00300 overlap by 1 nucleotidesNOLOHH_00300 and virB9 overlap by 11 nucleotidesvirB9 and NOLOHH_00310 overlap by 4 nucleotides NOLOHH_00295: virB11 - P-type DNA transfer ATPase VirB11, at 8,053 to 9,087 virB11 NOLOHH_00300: NOLOHH_00300 - conjugal transfer protein TrbI, at 9,087 to 10,370 _00300 NOLOHH_00305: virB9 - P-type conjugative transfer protein VirB9, at 10,360 to 11,268 virB9 NOLOHH_00310: NOLOHH_00310 - VirB8 domain-containing protein, at 11,265 to 11,954 _00310 Position (kb) 9 10 11Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 8.107 kb on - strandat 8.151 kb on + strandat 8.201 kb on + strand, within virB11at 8.223 kb on + strand, within virB11at 8.224 kb on - strand, within virB11at 8.360 kb on - strand, within virB11at 8.383 kb on - strand, within virB11at 8.387 kb on + strand, within virB11at 8.400 kb on + strand, within virB11at 8.453 kb on + strand, within virB11at 8.539 kb on - strand, within virB11at 8.659 kb on + strand, within virB11at 8.839 kb on - strand, within virB11at 8.842 kb on + strand, within virB11at 8.900 kb on - strand, within virB11at 8.977 kb on - strand, within virB11at 9.059 kb on + strandat 9.060 kb on - strandat 9.060 kb on - strandat 9.101 kb on - strandat 9.180 kb on - strandat 9.192 kb on - strandat 9.275 kb on + strand, within NOLOHH_00300at 9.275 kb on + strand, within NOLOHH_00300at 9.306 kb on + strand, within NOLOHH_00300at 9.307 kb on - strand, within NOLOHH_00300at 9.339 kb on + strand, within NOLOHH_00300at 9.339 kb on + strand, within NOLOHH_00300at 9.434 kb on + strand, within NOLOHH_00300at 9.435 kb on - strand, within NOLOHH_00300at 9.435 kb on - strand, within NOLOHH_00300at 9.498 kb on + strand, within NOLOHH_00300at 9.499 kb on - strand, within NOLOHH_00300at 9.499 kb on - strand, within NOLOHH_00300at 9.504 kb on - strand, within NOLOHH_00300at 9.504 kb on - strand, within NOLOHH_00300at 9.512 kb on + strand, within NOLOHH_00300at 9.512 kb on + strand, within NOLOHH_00300at 9.512 kb on + strand, within NOLOHH_00300at 9.547 kb on - strand, within NOLOHH_00300at 9.560 kb on + strand, within NOLOHH_00300at 9.571 kb on + strand, within NOLOHH_00300at 9.572 kb on - strand, within NOLOHH_00300at 9.572 kb on - strand, within NOLOHH_00300at 9.572 kb on - strand, within NOLOHH_00300at 9.572 kb on - strand, within NOLOHH_00300at 9.572 kb on - strand, within NOLOHH_00300at 9.573 kb on + strand, within NOLOHH_00300at 9.573 kb on + strand, within NOLOHH_00300at 9.573 kb on + strand, within NOLOHH_00300at 9.573 kb on + strand, within NOLOHH_00300at 9.573 kb on + strand, within NOLOHH_00300at 9.573 kb on + strand, within NOLOHH_00300at 9.574 kb on - strand, within NOLOHH_00300at 9.574 kb on - strand, within NOLOHH_00300at 9.574 kb on - strand, within NOLOHH_00300at 9.574 kb on - strand, within NOLOHH_00300at 9.574 kb on - strand, within NOLOHH_00300at 9.588 kb on + strand, within NOLOHH_00300at 9.588 kb on + strand, within NOLOHH_00300at 9.588 kb on + strand, within NOLOHH_00300at 9.589 kb on - strand, within NOLOHH_00300at 9.603 kb on - strand, within NOLOHH_00300at 9.663 kb on + strand, within NOLOHH_00300at 9.663 kb on + strand, within NOLOHH_00300at 9.663 kb on + strand, within NOLOHH_00300at 9.664 kb on - strand, within NOLOHH_00300at 9.664 kb on - strand, within NOLOHH_00300at 9.667 kb on + strand, within NOLOHH_00300at 9.667 kb on + strand, within NOLOHH_00300at 9.668 kb on - strand, within NOLOHH_00300at 9.668 kb on - strand, within NOLOHH_00300at 9.682 kb on + strand, within NOLOHH_00300at 9.682 kb on + strand, within NOLOHH_00300at 9.807 kb on - strand, within NOLOHH_00300at 9.935 kb on + strand, within NOLOHH_00300at 9.936 kb on - strand, within NOLOHH_00300at 9.969 kb on + strand, within NOLOHH_00300at 10.043 kb on + strand, within NOLOHH_00300at 10.056 kb on - strand, within NOLOHH_00300at 10.056 kb on - strand, within NOLOHH_00300at 10.056 kb on - strand, within NOLOHH_00300at 10.056 kb on - strand, within NOLOHH_00300at 10.058 kb on - strand, within NOLOHH_00300at 10.083 kb on + strand, within NOLOHH_00300at 10.084 kb on - strand, within NOLOHH_00300at 10.084 kb on - strand, within NOLOHH_00300at 10.084 kb on - strand, within NOLOHH_00300at 10.084 kb on - strand, within NOLOHH_00300at 10.245 kb on + strandat 10.290 kb on - strandat 10.447 kb on - strandat 10.457 kb on - strand, within virB9at 10.501 kb on - strand, within virB9at 10.551 kb on + strand, within virB9at 10.551 kb on + strand, within virB9at 10.620 kb on - strand, within virB9at 10.662 kb on + strand, within virB9at 10.662 kb on + strand, within virB9at 10.662 kb on + strand, within virB9at 10.737 kb on + strand, within virB9at 10.826 kb on + strand, within virB9at 10.838 kb on + strand, within virB9at 10.838 kb on + strand, within virB9at 10.839 kb on - strand, within virB9at 10.839 kb on - strand, within virB9at 10.849 kb on - strand, within virB9at 10.880 kb on - strand, within virB9at 10.893 kb on - strand, within virB9at 10.893 kb on - strand, within virB9at 10.945 kb on - strand, within virB9at 10.972 kb on - strand, within virB9at 10.972 kb on - strand, within virB9at 11.019 kb on - strand, within virB9at 11.158 kb on - strand, within virB9at 11.159 kb on + strand, within virB9at 11.160 kb on - strand, within virB9at 11.160 kb on - strand, within virB9at 11.215 kb on - strandat 11.219 kb on - strandat 11.257 kb on + strandat 11.262 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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8,107 - +0.1
8,151 + +0.3
8,201 + virB11 NOLOHH_00295 0.14 +0.5
8,223 + virB11 NOLOHH_00295 0.16 +1.0
8,224 - virB11 NOLOHH_00295 0.17 -0.2
8,360 - virB11 NOLOHH_00295 0.30 +0.1
8,383 - virB11 NOLOHH_00295 0.32 -0.2
8,387 + virB11 NOLOHH_00295 0.32 +0.6
8,400 + virB11 NOLOHH_00295 0.34 -0.1
8,453 + virB11 NOLOHH_00295 0.39 -0.5
8,539 - virB11 NOLOHH_00295 0.47 -0.2
8,659 + virB11 NOLOHH_00295 0.59 -0.8
8,839 - virB11 NOLOHH_00295 0.76 +0.4
8,842 + virB11 NOLOHH_00295 0.76 -0.3
8,900 - virB11 NOLOHH_00295 0.82 -0.6
8,977 - virB11 NOLOHH_00295 0.89 -0.0
9,059 + +0.5
9,060 - +0.5
9,060 - +2.9
9,101 - +0.5
9,180 - +0.1
9,192 - +0.2
9,275 + NOLOHH_00300 0.15 -0.1
9,275 + NOLOHH_00300 0.15 +0.5
9,306 + NOLOHH_00300 0.17 +0.3
9,307 - NOLOHH_00300 0.17 +0.7
9,339 + NOLOHH_00300 0.20 -0.7
9,339 + NOLOHH_00300 0.20 +0.1
9,434 + NOLOHH_00300 0.27 -1.2
9,435 - NOLOHH_00300 0.27 +0.2
9,435 - NOLOHH_00300 0.27 -0.1
9,498 + NOLOHH_00300 0.32 -0.7
9,499 - NOLOHH_00300 0.32 -0.5
9,499 - NOLOHH_00300 0.32 +0.2
9,504 - NOLOHH_00300 0.32 -0.1
9,504 - NOLOHH_00300 0.32 -0.2
9,512 + NOLOHH_00300 0.33 -0.4
9,512 + NOLOHH_00300 0.33 +0.3
9,512 + NOLOHH_00300 0.33 +1.0
9,547 - NOLOHH_00300 0.36 +0.5
9,560 + NOLOHH_00300 0.37 +0.6
9,571 + NOLOHH_00300 0.38 +1.3
9,572 - NOLOHH_00300 0.38 -0.3
9,572 - NOLOHH_00300 0.38 -2.4
9,572 - NOLOHH_00300 0.38 +0.8
9,572 - NOLOHH_00300 0.38 -1.0
9,572 - NOLOHH_00300 0.38 -0.2
9,573 + NOLOHH_00300 0.38 -2.0
9,573 + NOLOHH_00300 0.38 -1.9
9,573 + NOLOHH_00300 0.38 +0.2
9,573 + NOLOHH_00300 0.38 +0.4
9,573 + NOLOHH_00300 0.38 +0.0
9,573 + NOLOHH_00300 0.38 -1.2
9,574 - NOLOHH_00300 0.38 +0.0
9,574 - NOLOHH_00300 0.38 -0.5
9,574 - NOLOHH_00300 0.38 -0.3
9,574 - NOLOHH_00300 0.38 -0.4
9,574 - NOLOHH_00300 0.38 -1.4
9,588 + NOLOHH_00300 0.39 -0.0
9,588 + NOLOHH_00300 0.39 +0.2
9,588 + NOLOHH_00300 0.39 -0.7
9,589 - NOLOHH_00300 0.39 -0.2
9,603 - NOLOHH_00300 0.40 -0.9
9,663 + NOLOHH_00300 0.45 -0.3
9,663 + NOLOHH_00300 0.45 +0.5
9,663 + NOLOHH_00300 0.45 +0.3
9,664 - NOLOHH_00300 0.45 +0.3
9,664 - NOLOHH_00300 0.45 +0.3
9,667 + NOLOHH_00300 0.45 -0.3
9,667 + NOLOHH_00300 0.45 +0.1
9,668 - NOLOHH_00300 0.45 +1.3
9,668 - NOLOHH_00300 0.45 -0.5
9,682 + NOLOHH_00300 0.46 +0.0
9,682 + NOLOHH_00300 0.46 +0.7
9,807 - NOLOHH_00300 0.56 -3.6
9,935 + NOLOHH_00300 0.66 +1.1
9,936 - NOLOHH_00300 0.66 -0.3
9,969 + NOLOHH_00300 0.69 -0.5
10,043 + NOLOHH_00300 0.74 +0.6
10,056 - NOLOHH_00300 0.75 +0.5
10,056 - NOLOHH_00300 0.75 -0.3
10,056 - NOLOHH_00300 0.75 -0.7
10,056 - NOLOHH_00300 0.75 -0.2
10,058 - NOLOHH_00300 0.76 -0.5
10,083 + NOLOHH_00300 0.78 +0.2
10,084 - NOLOHH_00300 0.78 -0.6
10,084 - NOLOHH_00300 0.78 -0.7
10,084 - NOLOHH_00300 0.78 -0.8
10,084 - NOLOHH_00300 0.78 -0.6
10,245 + -0.4
10,290 - -0.8
10,447 - +0.2
10,457 - virB9 NOLOHH_00305 0.11 +0.2
10,501 - virB9 NOLOHH_00305 0.16 -0.4
10,551 + virB9 NOLOHH_00305 0.21 -1.5
10,551 + virB9 NOLOHH_00305 0.21 +0.5
10,620 - virB9 NOLOHH_00305 0.29 +0.4
10,662 + virB9 NOLOHH_00305 0.33 +0.1
10,662 + virB9 NOLOHH_00305 0.33 -0.8
10,662 + virB9 NOLOHH_00305 0.33 -1.4
10,737 + virB9 NOLOHH_00305 0.41 -1.9
10,826 + virB9 NOLOHH_00305 0.51 +0.7
10,838 + virB9 NOLOHH_00305 0.53 +1.3
10,838 + virB9 NOLOHH_00305 0.53 +0.6
10,839 - virB9 NOLOHH_00305 0.53 -0.4
10,839 - virB9 NOLOHH_00305 0.53 +0.1
10,849 - virB9 NOLOHH_00305 0.54 +0.5
10,880 - virB9 NOLOHH_00305 0.57 -0.5
10,893 - virB9 NOLOHH_00305 0.59 +0.8
10,893 - virB9 NOLOHH_00305 0.59 -0.1
10,945 - virB9 NOLOHH_00305 0.64 -0.2
10,972 - virB9 NOLOHH_00305 0.67 +0.6
10,972 - virB9 NOLOHH_00305 0.67 +1.0
11,019 - virB9 NOLOHH_00305 0.72 -0.6
11,158 - virB9 NOLOHH_00305 0.88 -0.0
11,159 + virB9 NOLOHH_00305 0.88 +0.6
11,160 - virB9 NOLOHH_00305 0.88 +0.7
11,160 - virB9 NOLOHH_00305 0.88 -0.2
11,215 - +0.1
11,219 - +0.7
11,257 + +0.1
11,262 + -0.7

Or see this region's nucleotide sequence